Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0212 ATGACTTGTTTCCCTTTCTGTTTTAGTAAAGTTGAAGCTTCCTCAGCCAATAATCAACCACTCGGAATCGATGAAGATGTTTCAAGCATCCAGAATGTTCGGTTATTCTCTTACAAGGAACTGCAAACTGCAACTCATAATTTCAGTCCGGCAAATAAAATCGGGCAGGGCGGTTTCGGTTCTGTCTACAAGGGACTGCTCAGAGATGGAAATGTAGTTGCTGTAAAGGTATTATCAGCCGACTCAAAACAAGGTGTTCGAGAATTCTTGACTGAAATTAACGTCATCTCAGATATAGTGCATGAAAATCTGGTTGAATTATATGGTTGCTGTGTGGAAAAGAATCAAAGGATCTTAGTCTATGGATATTTAGAGAATAACAGCCTTTCACAAACACTTCTCGGTGGAAGTCATAGTTCAATCCAATTTAGTTGGCCTGCAAGGCATAAGATATGCATAGGAGTTGCTCGTGGGCTTGCATTCCTTCACGAGGAAGTCCGGCCTCATATCATCCACAGAGACATCAAAGCAAGCAATATTTTACTCGATAAAGACCTGACGCCTAAAATCTCTGATTTTGGTCTGGCAAAGCTCATCCCAGCTCATTTGACCCATCTTAGCACCCGAGTTGCTGGAACAGCAGGTTATTTGGCGCCTGAATATGCTGTGCGAGGTCAAGTGACAAGAAAATCAGATATCTACAGTTTTGGTGTTCTGTTACTGGAAATCGTTAGTGGCAGGTGCAATACAAACCGGCGTTTGCCAGCTGGACAACAATACCTCCTCGAATGGGCATGGGATCTTTACGAGCAGGGGAAGTTGGTGGAATCGGTAGATTCATTTTTAGGTGGAGATTTCAATGCAGAGGAAGCTTCTAGATTTCTAAAAGTCAGTCTTCTCTGCACGCAAGACATGCCGAATCTACGGCCTTCTATGTCGAATGTGCTTAAGATGCTGATGGGTGAAATTCATGTGGATAACGAGAAAATATCCAAACCCGGATTGCTTTCGGATTTTATGGCATATAAAGATGGGATTGGAAAGAAGACAGAGGGCAAGGTGAGAGCCAGTTCTACGGAAGCTGGCTCGGGGAAGCAGACTGCATCGTCTTCTTCGTTGGGAGATGTTGCTACCTCTTATGGTACCATGACGTTCGACTCTATATTCGATCGGAGCAACTAA 1182 43.57 MTCFPFCFSKVEASSANNQPLGIDEDVSSIQNVRLFSYKELQTATHNFSPANKIGQGGFGSVYKGLLRDGNVVAVKVLSADSKQGVREFLTEINVISDIVHENLVELYGCCVEKNQRILVYGYLENNSLSQTLLGGSHSSIQFSWPARHKICIGVARGLAFLHEEVRPHIIHRDIKASNILLDKDLTPKISDFGLAKLIPAHLTHLSTRVAGTAGYLAPEYAVRGQVTRKSDIYSFGVLLLEIVSGRCNTNRRLPAGQQYLLEWAWDLYEQGKLVESVDSFLGGDFNAEEASRFLKVSLLCTQDMPNLRPSMSNVLKMLMGEIHVDNEKISKPGLLSDFMAYKDGIGKKTEGKVRASSTEAGSGKQTASSSSLGDVATSYGTMTFDSIFDRSN 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 902408 904837 - Conep09aG0021500.1 Cone9ag0212 444375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0212 393 ProSiteProfiles Protein kinase domain profile. 48 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0212 393 FunFam cold-responsive protein kinase 1 124 335 - -
Cone9ag0212 393 FunFam cold-responsive protein kinase 1 19 123 - -
Cone9ag0212 393 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Cone9ag0212 393 Gene3D Phosphorylase Kinase; domain 1 21 123 - -
Cone9ag0212 393 CDD STKc_IRAK 54 321 - -
Cone9ag0212 393 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone9ag0212 393 MobiDBLite consensus disorder prediction 356 376 - -
Cone9ag0212 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0212 393 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Cone9ag0212 393 SUPERFAMILY Protein kinase-like (PK-like) 25 319 IPR011009 -
Cone9ag0212 393 MobiDBLite consensus disorder prediction 352 376 - -
Cone9ag0212 393 SMART serkin_6 48 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0212 393 Pfam Protein kinase domain 51 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0987 Cone-Chr14:8136457 Cone9ag0212 Cone-Chr9:902408 2.18E-166 dispersed
Cone19ag1256 Cone-Chr19:8610969 Cone9ag0212 Cone-Chr9:902408 3.38E-121 dispersed
Cone6ag1029 Cone-Chr6:5801684 Cone9ag0212 Cone-Chr9:902408 4.42E-124 dispersed
Cone9ag0212 Cone-Chr9:902408 Cone9ag1025 Cone-Chr9:5436810 8.29E-125 dispersed
Cone9ag0711 Cone-Chr9:3410708 Cone9ag0212 Cone-Chr9:902408 1.22E-51 dispersed
Cone14ag1027 Cone-Chr14:8568692 Cone9ag0212 Cone-Chr9:902408 8.79E-109 wgd
Cone15ag1009 Cone-Chr15:8168530 Cone9ag0212 Cone-Chr9:902408 8.78E-88 wgd
Cone6ag0186 Cone-Chr6:887390 Cone9ag0212 Cone-Chr9:902408 2.91E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83160 PF06749 DUF1218 3.30E-31 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0212 - - - 0.0