Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0213 ATGTTAAGAATCAAAGAAATTTCAGATATGCAGGATGATGTCTTTGAGGGGTCTGAAGTAGAGCATCACATATTTAAGGAGGTTTTCTTTGGTAGTGAATCTGTCCAGTTTAGTCAGACATGTAATGTTGCTGGAGTGACTGGTTTTGGACGTGATTCCAGTAAGAATGCAGATACTTCGCTCTGTTCAAATACTGAAAACTCAATTGTTACGAGTATTTCATCCTCAAAAAGTTTAGATCTTCAGAAAGGTTTTAATGTAACTGAGAATGTTAGAGAGATTCCTGCCCCAGGTTGTTCTTTAAGTGGTCATACTGCAGGGGACGAAATTCATGAGAATGTGAATGCAAAGCGAATGAAATTTTCTACTGATGAGCTCCCAAATGCCAACCTGTATTTCGGTAAGGTTATAAACTCATCTGCAGTTACGAAAGAAATTTATTCTGGCAGGTATCGTCATGTTAAGGACTCTGGTTCTGAAATGGTGTCCTTTCAGATTGTGGAATCATCTAGTAAGGGTGTCACATCCAGCTACTATCTTTTTAGGCATTCCGAGAGACATGGGGGCATGGAGGACCGTGATATTTTAAAATGCAAAGTACAAAGTTTAGATGGTAACAATGGAAATGAGGTGGTTGCTAGCAAAGCTATTGCTTCACCGGTTTCCCAAGAAAGCTTTGTGACCAGGCTATTGGTTACAAGTCCAAATGTTGCTTTTGCTGACAAATCTTGCTCTCCATCTGCTGCAGAGGAAATACATGATGGTTTTGAATCCCAAGGATTCGATATGTCCAACTTCTCCTTGAAGACAGATTTTACAAGAGATCCCCGTCATCTTCTCCACTACCATGCTGTTCGCTTACTTATGTCAGCTGGATGGTCTATTGACCGGCGCAAAAGACCTAGCAGGCGTTCCATGGAAACGGTATATAGATCACCTCAGGGAAGGCCTGTTCGTGAATTCACCAGGGTTTGGAGGTTATGCGGTGACGTTTTGTTTGCTGATAGATGTAATTTTGTGAAGGAAGATGATGCTAAGGAATGGACTGGTATCAGTCAATTCTGGTCCGATCTTTCTGATACATTAATGAAAATTGAGAAAGAAATAAATCATTTGGGAACTAATTTCTTGGCTCATAGATGGAGTGCTTTAGATCCTTTTGTGGTAGTTGTCTTCATAGATAGGAAGATTGGTTCACTTAGAAAGGGAGATGTTGTTAGGGCAACTAGAAGCTTAGTGGTTAATCAAAGCAAGAAACCTGAAACTGATTTGACTTTACCGAAGGGAGATGTCATTGGATGCCTGCTTTCTCCTCATGTGTCAGCTCCACCTGCTGATTCTTCTCTGGTTACCAAATGTGCTTCTCCAGGGATAGGCTCCAATGTTATTGGAGTGAGCCACAGTGCCCCTGATGAAAAAACTTGTGATGTAAATTTCTCTGATCATGGTGAGCATACAATTGAAGGAGTGAAAGTACTGACAGGTGTGTCTATATATGTGACTAAATTAGGAGATGCTGCTAATGTGATGGGCAGTCAGTTTAGGGGAAGCTCTAAGACTGACATAGGCAATGAGGATATGACTTCATTACCTTCTTATGGATCAAATAGCACTTGCATCCAGTTTGGTGAGTGTACATATGATGTTCCTGTTGCTTCTGAAAACTATGATGATGTGCTGACTTTGAAATCAACATGCCCTGATAAAGAGAGATCTGGACGTAACTTTGAAAAATCTATAATAACTCCAGAAGATGTATCAACTGATGTTTTGGGGGAAAAAGATGAACAAAACGAAGTTCAAGTATCTGATAAAATGGGTGGGCTGTGCTTGAGTACTTCTAAGCTCAAAACAGATGACGTATGTTCTGCAGTAGATTTGGCTCTGAAGAAGAAGACACGAAGGAAGTCTAAAAAGATATCTGAAATCAATCCAATCATGTCTCTGCCATCTGACAATTTCTGTTCAACATCTGGAAAGAGCATGGAGTTGCAGGATATTGATGCCAATGGCTCCCAGATAAACTTGATAGAAGACCAGGATTACCACACACCCGACTGCAGAAACAACAATGATTGCCCTTCTTCCCAGTACTTTAATAAAAAAGAAAGCTTGAAGTTAAAGAAAGTTCGTAATGTTTGTAATGACTATAAACCTGGAAGAAAGAAATTGAGTGAATGTCAAATTGAAGATGATGACCTATTGGTTTCGGCCATAATTAAAAACAAGGATTTCAGCTCAATGACTATGAGATGTATCTCTAAGACAAAGAGGTGTAAATCTAGAGTCAGAGGAAGGACAAAAGGTCAAAAGAGTGGCTGTAGGTTGCGTTTAAGAAGCCTGGGAAATGGGGAAAAACATTATAAAGATGGAAAGTGGCATGCTATGGGAGCTAAAACAGTGCTGTCTTGGCTAATAGATGCTGGGGCTATTTCACTGAGTGATAGCATTCAATATCGGAACCCTAAAGATGATAGTGTACTTAAAGAAGGCCGGATCACCAGGGATGGAATTATCTGCACTTGCTGCAGTAAGGTGTTTACTGTTGCTGACTTCAAAATTCATGCTGGGTTTACGCTAAATCGGCCTTGTTTAAATCTTTTCATGGAATCTGGTAAGTCTTTTACTTTATGCCAGCTTCAAGCCTGGTCAGCTGAGTACAAGGCAAGGAAAAATGCAATCCAAGAAAGACAAACTGAGGATGATGATCCAAATGATGATTCATGTGGTGTGTGTGGTGATGGGGGTGAGTTACTATGCTGTGATAACTGCCCTTCTGCTTTTCACCAGGCTTGTTTATCCACTCAGGAGCTCCCAGAAGGCAACTGGTATTGCCCAAACTGCACCTGCTGGATATGTGGGGGCTTGGTTATTGATAAAGTGCCTTCAAGTGGATTTGATTCATTAAGATGTTGCCAGTGCGGACATAAGTATCATAAGCCATGCCTGGATAATAATGATATGCAGGTCGAAGCTGGATCGGAGACCTCGTTTTGTAGTGGGAGCTGTCAGGAGATATACTCAGGTCTTCAGTCACGTGTTGGACTTATAAATCAAGTAGCTGATGGGTTTTCATGGATGCTTCTTAGATGTATTCATGATGACCAAAAGCTCCATTCTGCCCAACGGTTTGCCCTCAAGGCAGAATGCAATTCCAGATTAGCTGTTGCTCTCACTATCATGGAGGAATGCTTTGTGTCCATGGTGGACGCCAGAACAGGGATTGATATGATACCCCATGTTGTATATAGTTGGGGGTCAGATTTTGTGCGTCTAAACTTCCATGGCTTTTACACAATGATACTAGAGAAAGATGACGTGGTAATATCCGTAGCATCGGTCAGAATACATGGAACAACAGTTGCTGAGATGCCTCTTGTTGCAACTTGCAGTACTTACCGTCGCCAAGGAATGTGTCGACGCCTATTGACTGCTGTTGAAGAGATACTATTATCATTGAAAGTCAAAAAGCTAGTCATAGCTGCAATCCCAAATCTAGTTGAGACTTGGACGGAAGGTTTTGGCTTCATGCCTGTGGAAGATGACGAAAAGCAAAGCCTTAATAAGATCAACTTGATGGTGTTTCCTGGAACGATACTACTCAAGAAACCCTTATATGGAACTCAAAAGCCAGGGAGAACAGGTGATAAAGAATGCTTGGAATCAACCAAACCCATAATTCATTCTGAGGTACTTCCAGTTTCTGAATCCACGGGCCAATCCACAATGGAAATTGAAGATTCGAAATGGGGGGAATTGCAAGAACTTGAAGGTCAGAATAGAAAGGAAAACTCCGAGGTCGATCCAGGACAAGTCAATTCATCTCCATCAAGGGCAGATGGATCAGATGAAATATGTATTTGTTCAGGGAAAGAGTCCACTCTATCTGTACATAAATCTGATGGGATCTCTTGTTCTAATGAAAAAATCGGTGCGGAAATGGAAATCAAACTAAAATGA 3960 41.09 MLRIKEISDMQDDVFEGSEVEHHIFKEVFFGSESVQFSQTCNVAGVTGFGRDSSKNADTSLCSNTENSIVTSISSSKSLDLQKGFNVTENVREIPAPGCSLSGHTAGDEIHENVNAKRMKFSTDELPNANLYFGKVINSSAVTKEIYSGRYRHVKDSGSEMVSFQIVESSSKGVTSSYYLFRHSERHGGMEDRDILKCKVQSLDGNNGNEVVASKAIASPVSQESFVTRLLVTSPNVAFADKSCSPSAAEEIHDGFESQGFDMSNFSLKTDFTRDPRHLLHYHAVRLLMSAGWSIDRRKRPSRRSMETVYRSPQGRPVREFTRVWRLCGDVLFADRCNFVKEDDAKEWTGISQFWSDLSDTLMKIEKEINHLGTNFLAHRWSALDPFVVVVFIDRKIGSLRKGDVVRATRSLVVNQSKKPETDLTLPKGDVIGCLLSPHVSAPPADSSLVTKCASPGIGSNVIGVSHSAPDEKTCDVNFSDHGEHTIEGVKVLTGVSIYVTKLGDAANVMGSQFRGSSKTDIGNEDMTSLPSYGSNSTCIQFGECTYDVPVASENYDDVLTLKSTCPDKERSGRNFEKSIITPEDVSTDVLGEKDEQNEVQVSDKMGGLCLSTSKLKTDDVCSAVDLALKKKTRRKSKKISEINPIMSLPSDNFCSTSGKSMELQDIDANGSQINLIEDQDYHTPDCRNNNDCPSSQYFNKKESLKLKKVRNVCNDYKPGRKKLSECQIEDDDLLVSAIIKNKDFSSMTMRCISKTKRCKSRVRGRTKGQKSGCRLRLRSLGNGEKHYKDGKWHAMGAKTVLSWLIDAGAISLSDSIQYRNPKDDSVLKEGRITRDGIICTCCSKVFTVADFKIHAGFTLNRPCLNLFMESGKSFTLCQLQAWSAEYKARKNAIQERQTEDDDPNDDSCGVCGDGGELLCCDNCPSAFHQACLSTQELPEGNWYCPNCTCWICGGLVIDKVPSSGFDSLRCCQCGHKYHKPCLDNNDMQVEAGSETSFCSGSCQEIYSGLQSRVGLINQVADGFSWMLLRCIHDDQKLHSAQRFALKAECNSRLAVALTIMEECFVSMVDARTGIDMIPHVVYSWGSDFVRLNFHGFYTMILEKDDVVISVASVRIHGTTVAEMPLVATCSTYRRQGMCRRLLTAVEEILLSLKVKKLVIAAIPNLVETWTEGFGFMPVEDDEKQSLNKINLMVFPGTILLKKPLYGTQKPGRTGDKECLESTKPIIHSEVLPVSESTGQSTMEIEDSKWGELQELEGQNRKENSEVDPGQVNSSPSRADGSDEICICSGKESTLSVHKSDGISCSNEKIGAEMEIKLK 1319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 906213 913303 + Conep09aG0021600.1 Cone9ag0213 444376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0213 1319 MobiDBLite consensus disorder prediction 1259 1283 - -
Cone9ag0213 1319 CDD PHD2_CHD_II 908 948 - -
Cone9ag0213 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 893 1036 IPR013083 -
Cone9ag0213 1319 PANTHER PHD FINGER FAMILY PROTEIN 109 1264 - -
Cone9ag0213 1319 Gene3D - 1077 1194 - -
Cone9ag0213 1319 MobiDBLite consensus disorder prediction 1265 1280 - -
Cone9ag0213 1319 CDD NAT_SF 1101 1160 - -
Cone9ag0213 1319 Pfam Tify domain binding domain 831 881 IPR032308 -
Cone9ag0213 1319 Pfam Acetyltransferase (GNAT) family 1094 1160 IPR000182 GO:0016747(InterPro)
Cone9ag0213 1319 SMART PHD_3 908 949 IPR001965 -
Cone9ag0213 1319 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1095 1181 IPR016181 -
Cone9ag0213 1319 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1056 1206 IPR000182 GO:0016747(InterPro)
Cone9ag0213 1319 Pfam PHD-finger 909 948 IPR019787 -
Cone9ag0213 1319 FunFam Increased DNA methylation 1 899 951 - -
Cone9ag0213 1319 SUPERFAMILY FYVE/PHD zinc finger 892 949 IPR011011 -
Cone9ag0213 1319 ProSiteProfiles Zinc finger PHD-type profile. 906 951 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0213 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0562 Cone-Chr1:5731309 Cone9ag0213 Cone-Chr9:906213 9.89E-92 dispersed
Cone5ag1271 Cone-Chr5:6081321 Cone9ag0213 Cone-Chr9:906213 2.14E-42 dispersed
Cone7ag1336 Cone-Chr7:9738098 Cone9ag0213 Cone-Chr9:906213 1.39E-21 dispersed
Cone6ag0187 Cone-Chr6:892098 Cone9ag0213 Cone-Chr9:906213 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46774 PF00400 WD40 0.00077 CL0186 Cone TR