Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0214 ATGTCTCATTCGGGTAAGCGTAATAGTACAGACCAACGTTTTGATAGTCTAACAGATCGGTTCCGTGACTCACTGAGTTGCGCAGCAGACAAGCCCGATTTCAGAGAAATAGATCTGGGTTCGCCCGTTTCGCCATTGCGGACTCGCCAAAGTGGAGGTGGACCTGCTATCAGTAGTAGTTCAAGCTCATCCGGATCAGTCTCGGGTCGTAATGGGTGTAACCCGGCACCTAAGAGATTCGATTCGGGTCCGAACAATCACTCCGGTGAACTCTCCGGTTCCAGTGAGAGCAGTCCCACAGCTGCAGAGAGTCTCCGATCCGCTGGAATACCTCGTAATTTCAAGCCGGGACATACCAGATCCAATTCCGGTTCAAGTCATCCATTAATCTACTCGAGCCAGAGCTCCGTCACTTCTCCGCCTACTCCTCTCAATGTGCTTCCCACCGGCAATATCTGCCCGTCTGGAAAGATTCTCAAGACGGGCATGGCATTAAATCGAAGCTCCAGAACAGAGGTTTTGGGTTCCGGGTCGGGTCATTACGGACATGGAAGCATAATGAGGGGTGGAACTGCGAGAAGCACTCTGCCTGAGGTATCTCACATGGCAAATGCAAGGGCAACCACAAGTCGAGGGGGCAGTGGTGGTGGTGTTGGCAGCAGCAGTGGCGGGGGTGGAGATTTGGTGAAGAGAGGAATGGTGAGTATGGATCCAGAGGAGGTGAAGAGGGTAGGGAATGAGACTTACAAAAGGGGTCATTTTGCGGAGGCTTTGAGCCTCTATGATAGAGCCATTACTCTTTCTCCAGCCAATGCAGCCTATCGAGCAAACCGAGCAGCTGCATTAACCGGTCTTGGGCGGCTCCATGAGGCTGTGGCCGAGTGTGAAGAGGCAGTTCGGTTGGATCCTAATTATGGGAGGGCTCATCACCGTTTGTCTACTCTTTTTGTTAGGTTAGGGCAGGTTGAGAATGCCCGGAGGCACCTTTTTATCATTCCCGGGCTGCAGCCAGATCCAATGGAGTTACAGAAACTGCAGTTTATTGAAAATTGTCTAAGAACATGTGGGGATGCCCGCAAGATTGGAGATTGGAAAAGTGCTTTGAGGGAGGTTGATTCTGCAATTGCTTCTGGCTCTGATTCTTCTCCTCAGCTCTTAATGTGTAGAGTGGAAGCACTTTTAAAACTCCATCAAATCGAGGAAGCTGAATCCACGTTATCAAATATCCCCAAATCTGAACCATCTCCAAGTTCCACACAAGCTCGATTTTTTTATATGCTTTCGGAAGCTTACCTTCACTTTGTCCGAGCCAAATTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTTTCTTCTGTGGAGAAAGCTGTCCAGATTGATCCTCGTAATATAGAAATAGCATTGTTACTTAGTAATGTACGTCAAGTAGCGAGAGCCCGGGCCCGTGGAAACGATCTCTTTAAATCCGAGAGGTTTACTGAGGCTGGATCTGCTTATGGGGAAGGTCTTAAGCTCGACCCTACAAACTCGGTACTCTATTGTAATCGAGCAGCTTGTTGGTTTAAGATTGGGATGTGGGAACGATCCATTGAAGATTGCAACGAAGCATTACATATCCAACCAAATTATACAAAAGCCCTTCTTAGAAGGGCGGCTTCAAACACTAAGCTTGAAAGATGGACAGATGCTGTTAGAGACTATGAGATTTTAAGGAGGGAACTTCCAGACAACAAAGAAGTAGCCGAGGCTCTATTTCATGCGCAGGTTGCATTGAAGAAATCTCGTGGTGAAGAAATTGTCGATATGAAGTTTGGTGGTGAAGTGGAAGAAGTTTCCGGAATCGAGCAGTTCCGAGCTGCGGTATCGTTTCCAGGTGTAACTGTTATTCATTTTGAAGCATCTTCTGACTTGCAATGCAAGAAAATATCATCCTTTGTTCACATGCTTTGTAGCCGCTACCCGTCCATAAATTTCCTCAAGGTGGATATTGAAGAAAGTCCTGGAATAGCAAGTGCGGAGAATATCCGGATCGTACCGACGTTCAAGATTTACAAAAACGGAAACAGAGTGAAAGAGATTGTGTGTCCGAGTAGAGACCTGTTGGAACACTCTGTGAGGTATTATAGCTTCTAG 2133 47.35 MSHSGKRNSTDQRFDSLTDRFRDSLSCAADKPDFREIDLGSPVSPLRTRQSGGGPAISSSSSSSGSVSGRNGCNPAPKRFDSGPNNHSGELSGSSESSPTAAESLRSAGIPRNFKPGHTRSNSGSSHPLIYSSQSSVTSPPTPLNVLPTGNICPSGKILKTGMALNRSSRTEVLGSGSGHYGHGSIMRGGTARSTLPEVSHMANARATTSRGGSGGGVGSSSGGGGDLVKRGMVSMDPEEVKRVGNETYKRGHFAEALSLYDRAITLSPANAAYRANRAAALTGLGRLHEAVAECEEAVRLDPNYGRAHHRLSTLFVRLGQVENARRHLFIIPGLQPDPMELQKLQFIENCLRTCGDARKIGDWKSALREVDSAIASGSDSSPQLLMCRVEALLKLHQIEEAESTLSNIPKSEPSPSSTQARFFYMLSEAYLHFVRAKFEMALGRFENAVSSVEKAVQIDPRNIEIALLLSNVRQVARARARGNDLFKSERFTEAGSAYGEGLKLDPTNSVLYCNRAACWFKIGMWERSIEDCNEALHIQPNYTKALLRRAASNTKLERWTDAVRDYEILRRELPDNKEVAEALFHAQVALKKSRGEEIVDMKFGGEVEEVSGIEQFRAAVSFPGVTVIHFEASSDLQCKKISSFVHMLCSRYPSINFLKVDIEESPGIASAENIRIVPTFKIYKNGNRVKEIVCPSRDLLEHSVRYYSF 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 917068 921187 + Conep09aG0021700.1 Cone9ag0214 444377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0214 710 SUPERFAMILY Thioredoxin-like 513 698 IPR036249 -
Cone9ag0214 710 Pfam Tetratricopeptide repeat 433 463 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 MobiDBLite consensus disorder prediction 44 71 - -
Cone9ag0214 710 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 476 509 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 272 305 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 238 271 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 544 577 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 430 463 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 SMART tpr_5 510 543 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 MobiDBLite consensus disorder prediction 26 143 - -
Cone9ag0214 710 MobiDBLite consensus disorder prediction 206 230 - -
Cone9ag0214 710 Pfam Tetratricopeptide repeat 248 304 - -
Cone9ag0214 710 Gene3D Tetratricopeptide repeat domain 236 596 IPR011990 GO:0005515(InterPro)
Cone9ag0214 710 Pfam Thioredoxin 615 697 IPR013766 -
Cone9ag0214 710 SUPERFAMILY TPR-like 239 329 IPR011990 GO:0005515(InterPro)
Cone9ag0214 710 MobiDBLite consensus disorder prediction 1 20 - -
Cone9ag0214 710 FunFam TPR repeat-containing thioredoxin TTL4 602 709 - -
Cone9ag0214 710 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 32 702 IPR044534 GO:0005737(PANTHER)
Cone9ag0214 710 MobiDBLite consensus disorder prediction 85 104 - -
Cone9ag0214 710 MobiDBLite consensus disorder prediction 116 143 - -
Cone9ag0214 710 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515(InterPro)
Cone9ag0214 710 CDD TRX_family 615 696 - -
Cone9ag0214 710 Gene3D Glutaredoxin 602 708 - -
Cone9ag0214 710 SUPERFAMILY TPR-like 383 567 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0214 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1443 Cone-Chr3:33149797 Cone9ag0214 Cone-Chr9:917068 5.01E-202 dispersed
Cone4ag1347 Cone-Chr4:10995561 Cone9ag0214 Cone-Chr9:917068 4.10E-94 dispersed
Cone6ag1570 Cone-Chr6:12252524 Cone9ag0214 Cone-Chr9:917068 1.22E-87 dispersed
Cone7ag1584 Cone-Chr7:10847042 Cone9ag0214 Cone-Chr9:917068 6.20E-99 dispersed
Cone9ag0214 Cone-Chr9:917068 Cone9ag1490 Cone-Chr9:10951437 7.87E-102 dispersed
Cone6ag0188 Cone-Chr6:904741 Cone9ag0214 Cone-Chr9:917068 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38