Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0232 ATGGCTCAAATTGAATCCACAAGCATTCATCAAGATATCGAAATCCTCGTCTCTGAGAAGCTCCAAGTGGTTTCCTACAAGTGGTTAAGTCGCAATTATATGGTATCATCAAATGCTGCAAAGACGTTGCTTCAAGAGTTTATTGAAAAGCATAGAAGCGAGTTGCAAGTGGTATATGTCTTGTCCGGCTGGTTGAAGACTAATCCTTCCAGTTACCACATAAGGCTTGTTTCTAGGCTGAAGCTTTCAGAAGCAAAACAGGATTTTAGCGGAAATTGTTCAGTTCATGTTTATAGTGTACAAGATTGTATCCCAAAGGATTCAACTGCACTATGGAATACTGAATTTGTACAAGCCGAAGAGCTCTTCAAGCAGCCATCCACAGTTGAGAATTGCCTGCGAGATAACAGGTTCAGTGGGATTTCCAACTCCTTCATCAAGCGCAATGCAGAGGGAGTATCTATGAACATTGCAGCACAGCCCAAAGCTATGGCATCCAAGAGTGATTCTGGGCATCAAAATATGTCCATTCCACAACCTAAGGAAATTAAGGTGGAAAAATCGGGTCAAAATGCTGGTCCACTGTCCACAATGATGGTGAAAAAGGAAGTTAAAATAGAAAATGATGGCCCAGGAACTCACTGTCAGGCAAGCAAGCCTCTTGGAGACAAAGAAAAAGCTCCTTCCTTGCCTGTTAGTAAAAAGAACGTCCAAACTGATAAAAGTTCTTGCGGTACTGGAGGTTCATTGGCAAATTTATGGGGCCGTGCTAGCTCCAAGCTAAAACCCGATTCAGTAACAGCAGAAGTTAAAAATGCCATTCCAGATCCTACTGTATCTAGTGCTGAGGTTCAAATTTTGGCCCGGGAAGTTATAGAAAGTGTCAGCAGTGATGATGATGGTCAAACTGTCAATTTTAAGAGAGCCTCCAATGGAGAGGGCAGTAAAAAGAGGAGGGTTGTCTTTGATTTCTCAGATGATGATGAATTTCAAGATGCAGTAAATTTAGGTTCACCAAATAATCCACAAGGAAAATCATGCCAAGATCCAAATGGAAATGCTAAACCCTTGGTTTCAAAGAAGGCTCATGAGAACTCTAACCAGATGGATGATAAAGAAGAAATAGTGATCGACAAAGAATCTAACCAAGCTTCAAAAGAAGACAGTCCTGCTCCAACTTCACCAAAAAAGGATAGTAAACCAACCAGTACTGCCCCAACTTCATCAAACGATAGTAAACCAATCAGTGCTGCTCCAACTTCACCAAAAAGGAGGAAAGTGTTGAAAACACGGATTGATGAGCGTGGGAGAGAAGTAACTGAAGTAGTTTGGGAGGGTGAAGACATGAATAAGGATAATGCCTGTGTAATAAAGAAAGGAGACCACAATACAGTCAACACTAACGTCACCAGACCCCCAGCAGCAGCTAAGAAGCCTCCAGCTCAAGGAAACATTAATTCGAATCCAACAGGTAAAGCTGGAACCAAGAAAGCGGGAAATTCAAAGGATCCTAAACAAGGCAATATTCTTTCCTTCTTCAAGAAGTTTTAA 1551 41.52 MAQIESTSIHQDIEILVSEKLQVVSYKWLSRNYMVSSNAAKTLLQEFIEKHRSELQVVYVLSGWLKTNPSSYHIRLVSRLKLSEAKQDFSGNCSVHVYSVQDCIPKDSTALWNTEFVQAEELFKQPSTVENCLRDNRFSGISNSFIKRNAEGVSMNIAAQPKAMASKSDSGHQNMSIPQPKEIKVEKSGQNAGPLSTMMVKKEVKIENDGPGTHCQASKPLGDKEKAPSLPVSKKNVQTDKSSCGTGGSLANLWGRASSKLKPDSVTAEVKNAIPDPTVSSAEVQILAREVIESVSSDDDGQTVNFKRASNGEGSKKRRVVFDFSDDDEFQDAVNLGSPNNPQGKSCQDPNGNAKPLVSKKAHENSNQMDDKEEIVIDKESNQASKEDSPAPTSPKKDSKPTSTAPTSSNDSKPISAAPTSPKRRKVLKTRIDERGREVTEVVWEGEDMNKDNACVIKKGDHNTVNTNVTRPPAAAKKPPAQGNINSNPTGKAGTKKAGNSKDPKQGNILSFFKKF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 980194 983087 - Conep09aG0023500.1 Cone9ag0232 444395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0232 516 Pfam DNA polymerase subunit Cdc27 23 515 IPR019038 GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0043625(InterPro)
Cone9ag0232 516 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 5 148 IPR041913 -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 311 326 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 294 435 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 208 244 - -
Cone9ag0232 516 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 515 IPR019038 GO:0003887(PANTHER)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006271(PANTHER)|GO:0006297(PANTHER)|GO:0043625(InterPro)|GO:0043625(PANTHER)|GO:1904161(PANTHER)
Cone9ag0232 516 MobiDBLite consensus disorder prediction 386 417 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 455 516 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 334 353 - -
Cone9ag0232 516 FunFam DNA polymerase delta subunit 7 149 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 364 385 - -
Cone9ag0232 516 MobiDBLite consensus disorder prediction 481 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0232 K03504 - - vvi:100250468 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0201 Cone-Chr6:953264 Cone9ag0232 Cone-Chr9:980194 1.43E-304 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g90 . . . . . Bpe08g00987 . . . . Cma01g01250 . . . . . . . . . . . . . . . . . . . . Cone6ag0201 Cone9ag0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010815 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30