Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0235 ATGGGTTTTGTGTTTTCGGCCGCTAAGACTGTTAATCTTGTAGCATATGTCTTACTGGTTTTGGTTTTCCTCGCATCGTTTGGATCCGACGCCCAGCTTTTGCCGGAAGAAGAAGTGAAAACTCTTCAAGCAATATCCTCAAAACTAGTGAAGTTGAATTGGGAGGTGAAACAGAATTCTTGCATTAAAGGTGAAGGATTTGATAACAGAGTCATCATTGCAGTCAAAATCCTAAGGAATGTAACCTGCAATTGCTCTTCTACTCTTTGCCATGTCACACTAATAGAGCTGAAGGGTCTTAATTTAACCGGGACTTTTCCGGCTGAATTCGGAAACCTCACTCAGTTACAGGTCCTTGATCTCTCTCGCAATTATATCAACGGAACAATTCCTGCAACTTTGGCTCGCATTCCACTTGTTAATCTGTCACTTCTCGGAAACCGGCTGAGCGGTCCGATTCCTAAGGAAATCGGCGACATTCATACCCTTCAAGAGCTGGTCTTGGAAGATAATCTCTTAGATGGAAATCTTCCGGACAGCCTCGGAAATTTGACCAGCTTGGACAGACTATTACTGTCTGCAAACAACTTTACAGGAGCAATACCAGAATCATATGGCCAGTTAAAGAACTTAACTGATTTTAGGATAGATGGGAATGGGATAACAGGGAAGCTGCCGGAACTCATAGGCAATTGGACCAAGCTTGACAGATTGGATATGCAAGGAACATCTATGACAACACCTATCCCTTTGACATTATCTCGGTTAACTAACTTAACTGAACTGAGGATTTCTGATTTGAATGGATCGACAACAAGCTTCCCTGATCTGTCAGGAATGACAAAATTAGAAGAATTGTATGCAACATATTCTTCAACTCACCGTAGGGTCTTGAGAAATTGCTTAATTATGGGAACAATCCCGGACTATATCGGAGAAATGAGTGTACTAAAAACTCTGGACTTGAGCTTCAACATGTTAACTGGTCCGATTCCGGGGACATTTCAAACACTTACCGATAATAAAAACAATAAATACATGTTTATGAGCAACAACTCATTGAGCGGCCAAGTACCATCTTGGATAACAGATAGTGAGAAGAACATAGATTTATCTTTTAATAATTTCACAGGATCTTCTGAAACTAGTTGTAGACAGTCGCCAGTGAATTTAGTTTCAAGTTTTTCATCCATGGCAGATGACGAAAATGTGTGGTGCCTCGAGAAAGATCTACCATGCTCGGAGAAAGCTAATTATCATTCATTGTTTATCAACTGTGGAGGAAGGAAGTTAGAGATTGACGGAGACAACTACGAAGAAGACTTAACAAGAGAAGGCCAATCAAACTTCTTTTCAGCTTCTGAGAAATGGGGTTGTAGTAGTGCAGGTATCTACATGGGATTGGAGAATGCAGACTACATAATATCAAATAATTTTGATCTGAACATAAGCGGACCGGAATTCTACCAAACGGCTCGGGTTGCTCCTGTTTCACTCAAGTACTATGGTTTTTGCTTGAGAAAAGGTAGTTACAATGTGAAGCTGCATTTTGCAGAAATCATGTATAGTAACGACCAAACATTTTGTAGCCTCGGAAGGCGCTTATTCGACGTATCGATTCAAGGGAGATTGATTAAGAAGGATTTTAATATAGTGGAAGAAGCCAGAGGGGTTGGTATGGGGTATGTTTTGGAAGAGAAAGATGTCGTTGTTAATGGAAGCACTCTCGTGATTCATTTATATTGGGCTGGAAAAGGAACTACTGCTATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCCATCACAGTTACACCAAACTATAAAGTCGAAACGGGAAGCCTATCTGCTGGAGCAATAGCCGGCATTGTAGTTGCTTCGTGTGTGCTTTTCTTATTAGTATTGGTAGCCCTCAGACGAAAAGGTTACTTAGGTAGGAAGGACATTGAGGATCAAGAATTACGCGGCCTAGATTTGCAAACCGGGTTTTTCACGTTGAGACAAATCAAAGCTGCCACCGGTGACTTTGACCCTGAAAATAAAATAGGCGAAGGTGGTTTCGGGCCAGTCTACAAGGGTGAATTGTCGGATGGCACTTTAATTGCTGTAAAGCAGCTATCTTCAAAATCGAAACAGGGAAACCGTGAATTTGTGACAGAGATTGGCATGATATCTGGATTGCAACACCCGAATCTTGTAAAGCTTTATGGTTGTTGTATAGAAGGAAACCAAATGTTACTTATTTATGAGTACCTCGAAAATAACTGTCTTGCCCGAGCACTTTTCGGTACAGGGGAACGAAGATTACACTTGGACTGGTCGGCGAGGAAGAAGATATGCTTAGATATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCAAGGCTGAAAATTGTTCATAGAGATATAAAAGCTACAAATGTGTTGCTTGACAAGAATCTAAATGCCAAGATTTCCGATTTCGGTTTAGCTAAGCTTAATGAAGAGGAGAATACCCATATAAGTACAAGAGTTGCCGGCACAATAGGTTATATGGCTCCAGAGTATGCAATGAGGGGTTACTTGACAGACAAGGCAGATGTTTACAGTTTCGGAATTGTTGTGTTAGAGCTTGTTAGCGGGAAAAGCAACATGAATTACAGGCCAAAGGAGGAGTTTGTCTATCTTCTTGATTGGGCCTATGTTTTACAAGAGCAGGGGAACCTACTAGAACTTGTTGATCCGAGCGTTGATTCAAACTACTCAAAGGAAGAGGCAATGACAATGCTCAATATTGGTCTTTTATGCACCAACCCGTCTCCTACTCTTAGACCGTCTATGTCATCTGTTGTGAGTATGCTTCAAGGCAACATTGCGGTGCAAGCACCGATCATTAAGCTCAATTCGATGGAACAAGATGCACGCTTTAAAGCCTTTGAGAGGCTCTCTCAGACTAGTCAATCTTATGTCTCGGAATCTTCACAAGACATGAGTCAGGTACAAAGGAGCACGTTAACAGATGGTCCATGGGGTAACTCATCTATTTCGGCTGGAAGCTCGTCAAGGAGATTTATGACGTAA 3063 41.4 MGFVFSAAKTVNLVAYVLLVLVFLASFGSDAQLLPEEEVKTLQAISSKLVKLNWEVKQNSCIKGEGFDNRVIIAVKILRNVTCNCSSTLCHVTLIELKGLNLTGTFPAEFGNLTQLQVLDLSRNYINGTIPATLARIPLVNLSLLGNRLSGPIPKEIGDIHTLQELVLEDNLLDGNLPDSLGNLTSLDRLLLSANNFTGAIPESYGQLKNLTDFRIDGNGITGKLPELIGNWTKLDRLDMQGTSMTTPIPLTLSRLTNLTELRISDLNGSTTSFPDLSGMTKLEELYATYSSTHRRVLRNCLIMGTIPDYIGEMSVLKTLDLSFNMLTGPIPGTFQTLTDNKNNKYMFMSNNSLSGQVPSWITDSEKNIDLSFNNFTGSSETSCRQSPVNLVSSFSSMADDENVWCLEKDLPCSEKANYHSLFINCGGRKLEIDGDNYEEDLTREGQSNFFSASEKWGCSSAGIYMGLENADYIISNNFDLNISGPEFYQTARVAPVSLKYYGFCLRKGSYNVKLHFAEIMYSNDQTFCSLGRRLFDVSIQGRLIKKDFNIVEEARGVGMGYVLEEKDVVVNGSTLVIHLYWAGKGTTAIPDRGVYGPLISAITVTPNYKVETGSLSAGAIAGIVVASCVLFLLVLVALRRKGYLGRKDIEDQELRGLDLQTGFFTLRQIKAATGDFDPENKIGEGGFGPVYKGELSDGTLIAVKQLSSKSKQGNREFVTEIGMISGLQHPNLVKLYGCCIEGNQMLLIYEYLENNCLARALFGTGERRLHLDWSARKKICLDIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNAKISDFGLAKLNEEENTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGIVVLELVSGKSNMNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSVDSNYSKEEAMTMLNIGLLCTNPSPTLRPSMSSVVSMLQGNIAVQAPIIKLNSMEQDARFKAFERLSQTSQSYVSESSQDMSQVQRSTLTDGPWGNSSISAGSSSRRFMT 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 991865 998065 - Conep09aG0023800.1 Cone9ag0235 444398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0235 1020 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 38 200 - -
Cone9ag0235 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 646 752 - -
Cone9ag0235 1020 MobiDBLite consensus disorder prediction 984 1020 - -
Cone9ag0235 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 973 IPR051824 -
Cone9ag0235 1020 CDD STKc_IRAK 683 950 - -
Cone9ag0235 1020 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Cone9ag0235 1020 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Cone9ag0235 1020 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515(InterPro)
Cone9ag0235 1020 Gene3D Ribonuclease Inhibitor 40 202 IPR032675 -
Cone9ag0235 1020 Gene3D Ribonuclease Inhibitor 203 294 IPR032675 -
Cone9ag0235 1020 Gene3D Ribonuclease Inhibitor 295 392 IPR032675 -
Cone9ag0235 1020 SUPERFAMILY L domain-like 79 384 - -
Cone9ag0235 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0235 1020 SMART serkin_6 677 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0235 1020 Gene3D Transferase(Phosphotransferase) domain 1 753 967 - -
Cone9ag0235 1020 SUPERFAMILY Protein kinase-like (PK-like) 661 963 IPR011009 -
Cone9ag0235 1020 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0235 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 419 608 - -
Cone9ag0235 1020 ProSiteProfiles Protein kinase domain profile. 677 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0235 1020 Pfam Malectin domain 422 603 IPR021720 -
Cone9ag0235 1020 Gene3D - 419 609 - -
Cone9ag0235 1020 Gene3D Phosphorylase Kinase; domain 1 646 752 - -
Cone9ag0235 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 753 960 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1011 Cone-Chr15:8308745 Cone9ag0235 Cone-Chr9:991865 0 dispersed
Cone15ag1012 Cone-Chr15:8316159 Cone9ag0235 Cone-Chr9:991865 3.03E-183 dispersed
Cone3ag1470 Cone-Chr3:33310787 Cone9ag0235 Cone-Chr9:991865 9.11E-245 dispersed
Cone6ag0207 Cone-Chr6:977819 Cone9ag0235 Cone-Chr9:991865 0 dispersed
Cone6ag0936 Cone-Chr6:4814838 Cone9ag0235 Cone-Chr9:991865 2.07E-229 dispersed
Cone9ag0235 Cone-Chr9:991865 Cone9ag1025 Cone-Chr9:5436810 3.68E-95 dispersed
Cone1ag0229 Cone-Chr1:1463415 Cone9ag0235 Cone-Chr9:991865 6.98E-214 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone9ag0235 Cone-Chr9:991865 3.80E-223 wgd
Cone6ag0206 Cone-Chr6:969913 Cone9ag0235 Cone-Chr9:991865 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83161 PF02485 Branch 9.30E-73 CL0110 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0235 - - - 0.0