Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0238 ATGCCTGGAAACAAGTACAACGGTAATTCAGACCATATTCCAGACCATATTCCTGGTCGAGAGGAAAGGCCCTTGAGAGTAAGAGAGCCAAGGAAAAACAGCAGGGCTTCAAACTCAAACGAGGCAAATGACAATTACAAGGAGAATGAATCAATAGAACGTGATTTTCGCTTCAGAGAAGATGATAACTCTGGAGTTTCTTGTGTTGGAAAATTCTTTGAAGCGTCTGTACCTACAAGGTCATTTACTGAGGGATGTGAGAGGCAAGACGGAAAACCTCTTAAACAGCGCCTTCTGGTTGTGGCTAACAGGCTGCCGGTGTCTGCAGTTAGGAGAGGTGAAGATTCCTGGTCTCTAGATATAAGTGCTGGTGGTCTAGTCAGTGCACTTCTGGGGGTAAAGGAGTTTGAGGCAAGATGGATTGGCTGGGCTGGTGTAAATGTACCGGATGAAACAGGACAAGAGGCACTAAAAAAAGCTTTAGCTGAAAAGAGATGTATCCCTGTATTCCTCGATGAAGAAATCGTTCATCAATATTACAACGGGTACTGCAACAATATTCTCTGGCCCCTTTTTCATTACCTCGGACTTCCACAAGAAGATCGTCTTGCCACCACCCGTAGTTTTCAGTCACAGTTTGCTGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTTAACCAGCACTACGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCCAAATGTCTGAAGGAACACAACAGTAAGATGAAAGTTGGGTGGTTTCTCCACACACCGTTTCCTTCTTCTGAAATTCACAGGACACTGCCATCTCGATCTGAGCTACTGCGTTCTGTGCTCGCCGCAGATTTAGTTGGTTTTCACACCTACGACTATGCCCGCCATTTTGTAAGTGCTTGCACACGTATTCTTGGACTTGAGGGTACACCTGAAGGAGTTGAGGATCAAGGGAGGCTGACCCGAGTAGCTGCATTTCCTATTGGCATAGACTCAAATCGGTTCATAAATGCAATCCAACTTCCTCAAGTCCAGGAGCACATCAAGGAATTAAAGGAAAGATTTAAAGGTCGAAAGGTGATGTTAGGTGTTGATCGCCTTGATATGATAAAAGGAATTCCTCAGAAGATACTGGCTTTTGAAAAGTTTTTGGAGGAAAATCTTACCTGGCGTGATAAAGTAGTATTGCTGCAAATTGCGGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAACTTACAAGCCAGGTTCATGAAATTGTTGGGCGCATTAATGGGAGATTTGGAACCTTGACCGCCGTCCCAATACATCATCTGGATTGTTCACTCGACTTTCATGCACTATGTGCTCTGTATGCTGTTACTGATGTAGCACTTGTGACATCTTTGAGAGATGGAATGAATCTTGTAAGCTATGAGTTTGTAGCATGCCAAGATGCAAAGAGAGGGGTCCTCATTCTTAGTGAGTTTGCTGGAGCTGCACAGTCTCTGGGTGCTGGAGCACTATTAGTGAACCCCTGGAATATAACAGAAGTTGCTAATTCAATCGATAAAGCTCTTAATATGACTGCTGAAGAGAGGGAAAAACGTCACAAGCATAACTATGAGCATGTGACCAGACATACCGCTCAAGATTGGGCTGAAATTTTTGTTAATGAATTGAATGATACTGTTGATGAAGCTGAACTAAGGATCCGACAAGCTCCTCCTTCTCTTCCATTTCAGGATGCAATTAAACAGTATTTGCGATCCCATAATCGTCTGCTCATACTGGGATTTAATGCTACTTTAACTGAACCTGTCGACTCGCCTGGGAGAAGGGGAGACCAAATTAAAGAAATGGAACTAAGGTTACACCCTGACCTACAAGAACAATTGATGGTACTTTGCAGCGACCCAAACACAACAATTGTTATCCTTAGTGGGAGTGTCAGAGAAGTTTTAGATAAGAATTTTGGACATTACGAGATGTGGTTAGCAGCAGAGAATGGGATGTTTCTGCGCCACACAAGGGGAGATTGGATGACTACAATGCCAGAGCATTTAAATATGGAATGGGTCGATAGTGTGGAGCATGTTTTCATGTATTTTACTCAGAGAACTCCTCGATCATATGTTGAAACCCGGGAAGCTTCACTTGTTTGGAATTATAAATATGCAGATGTGGAATTTGGAAGACTTCAAGCAAGGGATATGTTGCAGCATCTCTGGACAGGCCCAATATCTAATGCATCTGTTGATGTTGTACAAGGTAGTCGTTCAGTTGAAGTGCGAGCTGTTGGTGTTACAAAGGGCGCAGCAATCGATCGGATATTGGGAGAGATAGTTCACAGTAAGTCAATGACAACTCCTATAGATTATGTCCTGTGTATAGGGCATTTTCTCGGAAAGGATGAAGACGTCTATACCTTCTTTGAGCCCGAGCCTCCAACCGACAATACCAGTATTGCAAGAACCAAGGGAACAGATGGGATCAAGGTAGAGAGAAGATCTTCTTTAAAATTCCTGCCAAACAGAAGTGGATCTAAGTCAACTCATAATAATAAAACCCGGGCTTTGCCAAACGTTGAGAGGAAAACCAACAATCAAGCCTCTAGCAATGGGCGTAATAAACAATCACCTGAAAAGATTCAATGGAATGTACTTGATCTCAAGGGTGAGAATTACTTCTCGTGTGCTGTTGGGCGGACCCGGACATCTGCTCGGTACCTTCTTAATGGCTCAGGTGATGTTGTTTCATTTCTAAGAGAACTGGCCAATGCATCTTTGCTCAACTCTTGA 2802 43.18 MPGNKYNGNSDHIPDHIPGREERPLRVREPRKNSRASNSNEANDNYKENESIERDFRFREDDNSGVSCVGKFFEASVPTRSFTEGCERQDGKPLKQRLLVVANRLPVSAVRRGEDSWSLDISAGGLVSALLGVKEFEARWIGWAGVNVPDETGQEALKKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNQHYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSNRFINAIQLPQVQEHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENLTWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDCSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKRGVLILSEFAGAAQSLGAGALLVNPWNITEVANSIDKALNMTAEEREKRHKHNYEHVTRHTAQDWAEIFVNELNDTVDEAELRIRQAPPSLPFQDAIKQYLRSHNRLLILGFNATLTEPVDSPGRRGDQIKEMELRLHPDLQEQLMVLCSDPNTTIVILSGSVREVLDKNFGHYEMWLAAENGMFLRHTRGDWMTTMPEHLNMEWVDSVEHVFMYFTQRTPRSYVETREASLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPEPPTDNTSIARTKGTDGIKVERRSSLKFLPNRSGSKSTHNNKTRALPNVERKTNNQASSNGRNKQSPEKIQWNVLDLKGENYFSCAVGRTRTSARYLLNGSGDVVSFLRELANASLLNS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1015255 1021008 + Conep09aG0024100.1 Cone9ag0238 444401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0238 933 Gene3D Glycogen Phosphorylase B; 344 546 - -
Cone9ag0238 933 Gene3D Glycogen Phosphorylase B; 89 343 - -
Cone9ag0238 933 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 89 927 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone9ag0238 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 96 565 - -
Cone9ag0238 933 MobiDBLite consensus disorder prediction 843 883 - -
Cone9ag0238 933 Pfam Glycosyltransferase family 20 97 562 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone9ag0238 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 344 546 - -
Cone9ag0238 933 MobiDBLite consensus disorder prediction 14 35 - -
Cone9ag0238 933 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 687 767 - -
Cone9ag0238 933 CDD HAD_TPP 595 815 - -
Cone9ag0238 933 SUPERFAMILY HAD-like 594 926 IPR036412 -
Cone9ag0238 933 Gene3D - 687 767 - -
Cone9ag0238 933 CDD GT20_TPS 97 562 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone9ag0238 933 MobiDBLite consensus disorder prediction 1 54 - -
Cone9ag0238 933 Pfam Trehalose-phosphatase 609 825 IPR003337 GO:0005992(InterPro)
Cone9ag0238 933 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 97 562 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cone9ag0238 933 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 89 343 - -
Cone9ag0238 933 Gene3D - 621 781 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0594 Cone-Chr8:5022593 Cone9ag0238 Cone-Chr9:1015255 7.31E-141 dispersed
Cone9ag0238 Cone-Chr9:1015255 Cone9ag0385 Cone-Chr9:1756657 2.09E-133 dispersed
Cone1ag0235 Cone-Chr1:1538897 Cone9ag0238 Cone-Chr9:1015255 0 wgd
Cone5ag1625 Cone-Chr5:11434317 Cone9ag0238 Cone-Chr9:1015255 0 wgd
Cone6ag0210 Cone-Chr6:992992 Cone9ag0238 Cone-Chr9:1015255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0238 K16055 - csv:101204478 1548.87