Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0238 | ATGCCTGGAAACAAGTACAACGGTAATTCAGACCATATTCCAGACCATATTCCTGGTCGAGAGGAAAGGCCCTTGAGAGTAAGAGAGCCAAGGAAAAACAGCAGGGCTTCAAACTCAAACGAGGCAAATGACAATTACAAGGAGAATGAATCAATAGAACGTGATTTTCGCTTCAGAGAAGATGATAACTCTGGAGTTTCTTGTGTTGGAAAATTCTTTGAAGCGTCTGTACCTACAAGGTCATTTACTGAGGGATGTGAGAGGCAAGACGGAAAACCTCTTAAACAGCGCCTTCTGGTTGTGGCTAACAGGCTGCCGGTGTCTGCAGTTAGGAGAGGTGAAGATTCCTGGTCTCTAGATATAAGTGCTGGTGGTCTAGTCAGTGCACTTCTGGGGGTAAAGGAGTTTGAGGCAAGATGGATTGGCTGGGCTGGTGTAAATGTACCGGATGAAACAGGACAAGAGGCACTAAAAAAAGCTTTAGCTGAAAAGAGATGTATCCCTGTATTCCTCGATGAAGAAATCGTTCATCAATATTACAACGGGTACTGCAACAATATTCTCTGGCCCCTTTTTCATTACCTCGGACTTCCACAAGAAGATCGTCTTGCCACCACCCGTAGTTTTCAGTCACAGTTTGCTGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTTAACCAGCACTACGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCCAAATGTCTGAAGGAACACAACAGTAAGATGAAAGTTGGGTGGTTTCTCCACACACCGTTTCCTTCTTCTGAAATTCACAGGACACTGCCATCTCGATCTGAGCTACTGCGTTCTGTGCTCGCCGCAGATTTAGTTGGTTTTCACACCTACGACTATGCCCGCCATTTTGTAAGTGCTTGCACACGTATTCTTGGACTTGAGGGTACACCTGAAGGAGTTGAGGATCAAGGGAGGCTGACCCGAGTAGCTGCATTTCCTATTGGCATAGACTCAAATCGGTTCATAAATGCAATCCAACTTCCTCAAGTCCAGGAGCACATCAAGGAATTAAAGGAAAGATTTAAAGGTCGAAAGGTGATGTTAGGTGTTGATCGCCTTGATATGATAAAAGGAATTCCTCAGAAGATACTGGCTTTTGAAAAGTTTTTGGAGGAAAATCTTACCTGGCGTGATAAAGTAGTATTGCTGCAAATTGCGGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAACTTACAAGCCAGGTTCATGAAATTGTTGGGCGCATTAATGGGAGATTTGGAACCTTGACCGCCGTCCCAATACATCATCTGGATTGTTCACTCGACTTTCATGCACTATGTGCTCTGTATGCTGTTACTGATGTAGCACTTGTGACATCTTTGAGAGATGGAATGAATCTTGTAAGCTATGAGTTTGTAGCATGCCAAGATGCAAAGAGAGGGGTCCTCATTCTTAGTGAGTTTGCTGGAGCTGCACAGTCTCTGGGTGCTGGAGCACTATTAGTGAACCCCTGGAATATAACAGAAGTTGCTAATTCAATCGATAAAGCTCTTAATATGACTGCTGAAGAGAGGGAAAAACGTCACAAGCATAACTATGAGCATGTGACCAGACATACCGCTCAAGATTGGGCTGAAATTTTTGTTAATGAATTGAATGATACTGTTGATGAAGCTGAACTAAGGATCCGACAAGCTCCTCCTTCTCTTCCATTTCAGGATGCAATTAAACAGTATTTGCGATCCCATAATCGTCTGCTCATACTGGGATTTAATGCTACTTTAACTGAACCTGTCGACTCGCCTGGGAGAAGGGGAGACCAAATTAAAGAAATGGAACTAAGGTTACACCCTGACCTACAAGAACAATTGATGGTACTTTGCAGCGACCCAAACACAACAATTGTTATCCTTAGTGGGAGTGTCAGAGAAGTTTTAGATAAGAATTTTGGACATTACGAGATGTGGTTAGCAGCAGAGAATGGGATGTTTCTGCGCCACACAAGGGGAGATTGGATGACTACAATGCCAGAGCATTTAAATATGGAATGGGTCGATAGTGTGGAGCATGTTTTCATGTATTTTACTCAGAGAACTCCTCGATCATATGTTGAAACCCGGGAAGCTTCACTTGTTTGGAATTATAAATATGCAGATGTGGAATTTGGAAGACTTCAAGCAAGGGATATGTTGCAGCATCTCTGGACAGGCCCAATATCTAATGCATCTGTTGATGTTGTACAAGGTAGTCGTTCAGTTGAAGTGCGAGCTGTTGGTGTTACAAAGGGCGCAGCAATCGATCGGATATTGGGAGAGATAGTTCACAGTAAGTCAATGACAACTCCTATAGATTATGTCCTGTGTATAGGGCATTTTCTCGGAAAGGATGAAGACGTCTATACCTTCTTTGAGCCCGAGCCTCCAACCGACAATACCAGTATTGCAAGAACCAAGGGAACAGATGGGATCAAGGTAGAGAGAAGATCTTCTTTAAAATTCCTGCCAAACAGAAGTGGATCTAAGTCAACTCATAATAATAAAACCCGGGCTTTGCCAAACGTTGAGAGGAAAACCAACAATCAAGCCTCTAGCAATGGGCGTAATAAACAATCACCTGAAAAGATTCAATGGAATGTACTTGATCTCAAGGGTGAGAATTACTTCTCGTGTGCTGTTGGGCGGACCCGGACATCTGCTCGGTACCTTCTTAATGGCTCAGGTGATGTTGTTTCATTTCTAAGAGAACTGGCCAATGCATCTTTGCTCAACTCTTGA | 2802 | 43.18 | MPGNKYNGNSDHIPDHIPGREERPLRVREPRKNSRASNSNEANDNYKENESIERDFRFREDDNSGVSCVGKFFEASVPTRSFTEGCERQDGKPLKQRLLVVANRLPVSAVRRGEDSWSLDISAGGLVSALLGVKEFEARWIGWAGVNVPDETGQEALKKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNQHYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSNRFINAIQLPQVQEHIKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENLTWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDCSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKRGVLILSEFAGAAQSLGAGALLVNPWNITEVANSIDKALNMTAEEREKRHKHNYEHVTRHTAQDWAEIFVNELNDTVDEAELRIRQAPPSLPFQDAIKQYLRSHNRLLILGFNATLTEPVDSPGRRGDQIKEMELRLHPDLQEQLMVLCSDPNTTIVILSGSVREVLDKNFGHYEMWLAAENGMFLRHTRGDWMTTMPEHLNMEWVDSVEHVFMYFTQRTPRSYVETREASLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPEPPTDNTSIARTKGTDGIKVERRSSLKFLPNRSGSKSTHNNKTRALPNVERKTNNQASSNGRNKQSPEKIQWNVLDLKGENYFSCAVGRTRTSARYLLNGSGDVVSFLRELANASLLNS | 933 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1015255 | 1021008 | + | Conep09aG0024100.1 | Cone9ag0238 | 444401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0238 | 933 | Gene3D | Glycogen Phosphorylase B; | 344 | 546 | - | - | |
Cone9ag0238 | 933 | Gene3D | Glycogen Phosphorylase B; | 89 | 343 | - | - | |
Cone9ag0238 | 933 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 89 | 927 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Cone9ag0238 | 933 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 96 | 565 | - | - | |
Cone9ag0238 | 933 | MobiDBLite | consensus disorder prediction | 843 | 883 | - | - | |
Cone9ag0238 | 933 | Pfam | Glycosyltransferase family 20 | 97 | 562 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cone9ag0238 | 933 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 344 | 546 | - | - | |
Cone9ag0238 | 933 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
Cone9ag0238 | 933 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 687 | 767 | - | - | |
Cone9ag0238 | 933 | CDD | HAD_TPP | 595 | 815 | - | - | |
Cone9ag0238 | 933 | SUPERFAMILY | HAD-like | 594 | 926 | IPR036412 | - | |
Cone9ag0238 | 933 | Gene3D | - | 687 | 767 | - | - | |
Cone9ag0238 | 933 | CDD | GT20_TPS | 97 | 562 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Cone9ag0238 | 933 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cone9ag0238 | 933 | Pfam | Trehalose-phosphatase | 609 | 825 | IPR003337 | GO:0005992(InterPro) | |
Cone9ag0238 | 933 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 97 | 562 | IPR012766 | GO:0003825(InterPro)|GO:0005992(InterPro) | |
Cone9ag0238 | 933 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 89 | 343 | - | - | |
Cone9ag0238 | 933 | Gene3D | - | 621 | 781 | IPR023214 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone8ag0594 | Cone-Chr8:5022593 | Cone9ag0238 | Cone-Chr9:1015255 | 7.31E-141 | dispersed | |
Cone9ag0238 | Cone-Chr9:1015255 | Cone9ag0385 | Cone-Chr9:1756657 | 2.09E-133 | dispersed | |
Cone1ag0235 | Cone-Chr1:1538897 | Cone9ag0238 | Cone-Chr9:1015255 | 0 | wgd | |
Cone5ag1625 | Cone-Chr5:11434317 | Cone9ag0238 | Cone-Chr9:1015255 | 0 | wgd | |
Cone6ag0210 | Cone-Chr6:992992 | Cone9ag0238 | Cone-Chr9:1015255 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0238 | K16055 | - | csv:101204478 | 1548.87 |