Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0239 ATGACTACATACACCCCCAAGAACATCCTCATTACTGGAGCTGCTGGGTTCATCGCATCACATGTTGCCAACAGGCTCATCCGTAGTTATCCTGACTACAAAATTGTTGTACTTGACAAGCTTGACTACTGTTCAAACCTGAAAAACCTTCTTCCCTCTAAATCATCTCCTAACTTCAAGTTTGTTAAGGGAGATATTGGCAGTGCTGACCTTGTTAACTACCTCTTAGTTGCCGAGTCGATTGATACCATAATGCATTTTGCAGCCCAGACCCATGTTGACAACTCATTCGGAAATAGTTTTGAGTTCACCAAGAATAACATTTATGGTACTCATGTCCTTTTGGAAGCCTGTAAAGTCACTGGCCAAATCAGGAGATTCATTCATGTCAGCACTGACGAGGTCTATGGGGAAACAGATGAGGACGCTGTAGTAGGAAACCATGAGGCTTCTCAACTCCTCCCAACAAATCCTTACTCAGCAACAAAGGCTGGAGCAGAAATGCTTGTCATGGCATATGGTAGGTCTTATGGGTTACCTGTGATCACAACCAGAGGAAACAATGTCTATGGTCCTAATCAGTTTCCTGAAAAGCTAATTCCAAAGTTCATCCTCTTGGCCATGAGGGGAAAGCCTCTTCCAATCCACGGGGATGGTTCCAATGTGAGGAGCTACTTGTATTGCGAAGATGTTGCTGAGGCTTTTGAAGTCATTCTTCATAAGGGAGAGGTGGGCCATGTCTACAACATTGGGACAAAGAAGGAAAGGAGGGTCGTTGATGTTGCTAAAGACATATGCAGACTTTTCTCAATGGACCCCGACCAGAGCATCAAATTTGTGGAAAACAGACCATTTAATGACCAGAGGTACTTTTTGGATGATCAGAAACTCAAGGTGTTGGGTTGGTCAGAACGAACTTCTTGGGATGAGGGGTTGAAGAAGACTATTGAATGGTACACAAAGAATCCTGGTTGGTGGGGTGATGTCTCAGGGGCTCTTCTTCCTCATCCAAGAATGCTTATGATGCCTGGTGGAATTGAGAGGCATTTTGATGGAGCTGAAGAGGAAAAGTCTGCATCTTACGCCTCGAGCAATACCCGGATGGTGGTTCCATCTTCCAAAGTTGTTGGCTCTCCTCGAAAACCATCATTGAAGTTCTTGATCTATGGTAGGACCGGGTGGATTGGGGGCCTGCTCGGAAAGCTCTGTGAGAAACAAGGTATCGCATATGAATATGGAAAAGGAAGACTAGAGGATCGTGCATCAATACAAGCTGATATTCAGAATGTTAAACCAACCCATGTTTTCAATGCTGCTGGAGTGACTGGTCGGCCAAATGTTGATTGGTGCGAATCTCACAAGACCGAAACAATTAGAGCCAATGTAGCAGGAACTTTAACCTTAGCTGATGTCAGCAGAGAACACGGGCTCCTGGTCATAAATTTCGCTACTGGGTGTATCTTTGAGTATGATGCTCAACATCCAGAAGGATCTGGCATTGGGTTTAAGGAGGAAGACACGCCCAACTTCATCGGTTCTTTCTATTCAAAAACCAAAGCCATGGTTGAGGAGCTCTTGAAAGAATATGACAATGTCTGCACCCTCAGAGTCCGGATGCCTATTTCATCGGACCTTAACAACCCACGCAATTTCATTACTAAGATTTCCCGCTATAACAAGGTGGTTAATATCCCAAACAGCATGACTGTCTTGGATGAACTGCTACCCATTTCGATTGAGATGGCAAGGAGGAACTTGAGAGGGATATGGAATTTCACCAACCCAGGAGTTGTGAGCCATAATGAGATTCTGGAGATGTACAAGAAGTATATTAACCCGGAGTTTAAGTGGGCTAACTTCACCCTCGAAGAACAAGCCAAGGTGATAGTAGCCCCACGAAGCAACAATGAGTTGGATCAATCTAAGTTGAAAAACGAGTTTCCTGAGCTGCTTTCCATTACAGAGTCGCTGATCAAGTATGTCTTTGAGCCAAACAAAAAGACCACTGCGGAGTAA 2016 44.44 MTTYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLVAESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVVDVAKDICRLFSMDPDQSIKFVENRPFNDQRYFLDDQKLKVLGWSERTSWDEGLKKTIEWYTKNPGWWGDVSGALLPHPRMLMMPGGIERHFDGAEEEKSASYASSNTRMVVPSSKVVGSPRKPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRASIQADIQNVKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVSREHGLLVINFATGCIFEYDAQHPEGSGIGFKEEDTPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMARRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWANFTLEEQAKVIVAPRSNNELDQSKLKNEFPELLSITESLIKYVFEPNKKTTAE 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1021249 1024616 - Conep09aG0024200.1 Cone9ag0239 444402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0239 671 FunFam UDP-glucose 4,6-dehydratase 9 209 - -
Cone9ag0239 671 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 340 - GO:0010253(PANTHER)|GO:0010280(PANTHER)|GO:0010315(PANTHER)|GO:0050377(PANTHER)|GO:0051555(PANTHER)
Cone9ag0239 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 645 IPR036291 -
Cone9ag0239 671 CDD dTDP_GD_SDR_e 7 323 IPR005888 GO:0008460(InterPro)|GO:0009225(InterPro)
Cone9ag0239 671 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Cone9ag0239 671 Gene3D - 200 322 - -
Cone9ag0239 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 332 IPR036291 -
Cone9ag0239 671 Gene3D - 377 671 - -
Cone9ag0239 671 CDD dTDP_HR_like_SDR_e 385 657 - -
Cone9ag0239 671 Gene3D - 9 313 - -
Cone9ag0239 671 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Cone9ag0239 671 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 376 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0239 K12450 - - csv:101208780 1259.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1019 Cone-Chr14:8516548 Cone9ag0239 Cone-Chr9:1021249 0 dispersed
Cone6ag0738 Cone-Chr6:3730855 Cone9ag0239 Cone-Chr9:1021249 4.50E-124 dispersed
Cone8ag0366 Cone-Chr8:2157894 Cone9ag0239 Cone-Chr9:1021249 6.16E-19 dispersed
Cone8ag1566 Cone-Chr8:11700740 Cone9ag0239 Cone-Chr9:1021249 0 dispersed
Cone9ag0239 Cone-Chr9:1021249 Cone9ag0743 Cone-Chr9:3532166 1.82E-171 dispersed
Cone6ag0211 Cone-Chr6:998981 Cone9ag0239 Cone-Chr9:1021249 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0211 Cone9ag0239 Cone14ag1019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86