Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0241 ATGGAGGAAGCTCAATCCCACCGCTTACCTCCTCTCAAGAGATTCAGAAAACTCCAACAACAACACGAGGAAGAAGACATGAGCGCTTCCAACTCCCACCGCCTCCCCGCAAAGAAGCGGAAGGAATCACGGGACCCACTGCTCCTCCCTGGCCCCACCATCTCCACCACCACCACATATTGCTTGCCTACCAAAAAAAGAGTATGGTCGTTTCAACCTGGATCATTCGACCTCAATATCGAATACAGCCCGCCTCTAGACCACGAGAAAGTCAAAGAAAGGAAAATCTCATTTCCAGATGCTGAAACTCAAGCCATGGAAGCTAGCCCAGAAAAAGCCAGAGAGGCCAATCTGGAAGAAGAAGAAGTAGAATACAATGAAGATGATGGGATTGTCTGTGCTGTTTGTCAAAGCACAGATGGAGATCCGTCAGATCCAATTGTGTTTTGTGATGGATGCGATCTTATGGTTCACGCTTCTTGTTATGGAAATCCCTTAGTTAAAAGTATACCGGAAGGTGATTGGTTCTGTGCCCAATGCTCTGCTTCTTCTTCCTCTTCTTCGAACAAAAAACCCTCTGATTGTTGCTTATGTCCGATCAAAGGAGGTGCCATAAAACAAACTAAAGATGGTCGCTGGGCCCACATTGTGTGCGCGCTTTATGTCCCCGAGGCGTTCTTTGAAGACCCGGAAGGGAGAGAAGGGATCGATTTATCCATGGTTCCAAAAAGGAGGTGGAATGAGACATGTGATGTTTGTAAAAAAGTTCGTGGCTGTGCTATTGATTGCTCCGAGCTAAACTGCACTCTGGCTTTTCATGTTGGTTGTGGCCTTAAGGAAGATCTTTGTATTGAGTATAGAGAAGGGAGGAGGAAAGGTGCTATTGTTGCTGGGTTCTGTAAAACCCACACTAAATTGTGGGAGAAGCAACAACAGACAGGGAAGTTCAAGATTGTGGCTAGAGATGAAGCGAAAGTAGAGTAG 984 46.34 MEEAQSHRLPPLKRFRKLQQQHEEEDMSASNSHRLPAKKRKESRDPLLLPGPTISTTTTYCLPTKKRVWSFQPGSFDLNIEYSPPLDHEKVKERKISFPDAETQAMEASPEKAREANLEEEEVEYNEDDGIVCAVCQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCAQCSASSSSSSNKKPSDCCLCPIKGGAIKQTKDGRWAHIVCALYVPEAFFEDPEGREGIDLSMVPKRRWNETCDVCKKVRGCAIDCSELNCTLAFHVGCGLKEDLCIEYREGRRKGAIVAGFCKTHTKLWEKQQQTGKFKIVARDEAKVE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1029375 1030483 + Conep09aG0024400.1 Cone9ag0241 444404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0241 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 188 IPR013083 -
Cone9ag0241 327 ProSiteProfiles Zinc finger PHD-type profile. 130 183 IPR019787 -
Cone9ag0241 327 MobiDBLite consensus disorder prediction 99 120 - -
Cone9ag0241 327 PANTHER PHD FINGER PROTEINS 27 305 IPR050701 GO:0006357(PANTHER)
Cone9ag0241 327 ProSitePatterns Zinc finger PHD-type signature. 133 180 IPR019786 -
Cone9ag0241 327 SMART PHD_3 132 181 IPR001965 -
Cone9ag0241 327 SMART PHD_3 249 304 IPR001965 -
Cone9ag0241 327 MobiDBLite consensus disorder prediction 1 46 - -
Cone9ag0241 327 MobiDBLite consensus disorder prediction 1 51 - -
Cone9ag0241 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 306 IPR013083 -
Cone9ag0241 327 ProSiteProfiles Extended PHD (ePHD) domain profile. 192 304 IPR034732 -
Cone9ag0241 327 CDD PHD_BRPF_JADE_like 132 180 - -
Cone9ag0241 327 Pfam PHD-finger 133 180 IPR019787 -
Cone9ag0241 327 Pfam PHD-zinc-finger like domain 194 290 - -
Cone9ag0241 327 SUPERFAMILY FYVE/PHD zinc finger 119 200 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0213 Cone-Chr6:1004890 Cone9ag0241 Cone-Chr9:1029375 3.86E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46775 PF00350 Dynamin_N 5.90E-33 CL0023 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0241 K11380 - csv:101203744 409.838