Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0263 ATGAGCGAAGAAGACAAGAGCAGAGGGATCGGTTCCGGGTATCATCATCAACATCATCCACAAGAACAGCAGCCTCAGTACGGAACTTTCCAGGGTGTTCCTCAACATCCACATCCACATCCACCGCCTCCCGTCGGATTTCCTCAACCTGTTCCACCGCCGGGCGCCTCCGAGCACCCTCCTCTTCCGCCTCCTCCTCCTCCTCAGTACTATGCTGTTGGATATCAATCTGTTCCTGGTTATGCTGTTGCCGAAGGAAGGCCGGTAAGGGAGCGCCGACTGCCATGTTGCGGTATTGGTCTTGGCTGGTTTCTGTTTATCATCGGATTCTTCCTCGCTGCCATACCCTGGTATGTTGGGGTAATCCTTATGGTTTGCGCCCGACCAGATCACAGAGAGAAGCCTGGATATGTTGCTTGCACCATTGCTGCTGTTCTTGCGACTATTGCGATCGTTTTGGGTGTAACAAAGGGTACAGATTCATGGTGA 489 52.76 MSEEDKSRGIGSGYHHQHHPQEQQPQYGTFQGVPQHPHPHPPPPVGFPQPVPPPGASEHPPLPPPPPPQYYAVGYQSVPGYAVAEGRPVRERRLPCCGIGLGWFLFIIGFFLAAIPWYVGVILMVCARPDHREKPGYVACTIAAVLATIAIVLGVTKGTDSW 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1103081 1104557 + Conep09aG0026600.1 Cone9ag0263 444426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0263 162 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 1 162 IPR044804 -
Cone9ag0263 162 MobiDBLite consensus disorder prediction 1 69 - -
Cone9ag0263 162 MobiDBLite consensus disorder prediction 35 69 - -
Cone9ag0263 162 MobiDBLite consensus disorder prediction 17 31 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0263 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1010 Cone-Chr14:8455108 Cone9ag0263 Cone-Chr9:1103081 4.77E-53 dispersed
Cone6ag0897 Cone-Chr6:4604038 Cone9ag0263 Cone-Chr9:1103081 2.31E-40 dispersed
Cone6ag0230 Cone-Chr6:1069146 Cone9ag0263 Cone-Chr9:1103081 1.80E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g877 Blo03g00725 . . . Bpe09g00276 . . . . . . . . . Sed05g2485 . . Bhi09g03590 Tan01g4232 Cmetu07g0229 . Hepe01g1484 Mch11g0963 . . . . . . . . Cone6ag0230 Cone9ag0263 . . Lsi04g01956 . . . . . . Bda12g00800 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002437 3 2 3 3 4 1 2 2 0 2 1 1 2 2 2 1 1 4 0 1 2 2 2 2 2 2 1 4 3 2 59