Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0274 ATGCTTCGGAGCTTAGTTCAATCTCCAATCAGTTCAAGTTCGAATCCCAAACCTAATAATCCTATCTCTACTATGAAGAGTAAGCGCGGTGATCATGAGCTCACCGCCGGCGGAAGCGATTCCTCAGTCGAAGAACCGTCCACGAAACGCCCAATCGTCTACGGCGATACCCCAATTTCCGGCGAGAAAACTATCGAAGAACGCGAAGAAGAGGAAGAAGCGGATGAAGTGGTAGTACCAGTCAAGGAGGTTGAGTCAAATGGTTTGAGATTGATAGGGCTTTTGCTTCAATGCGCTGAGTGTGTCGCTGTTGACAACCTACACGAAGCCAGCGATCTTCTACCCGAAATCGCCGAGCTCTCGTCGCCGTTCGGCTCGTCGCCTGAAAGAGTAGGTGCGTACTTCGCCCACGCGCTCCAGACGCGCGTGATAAGCTCTTGCTTAGGTACCTACTCGCCCTTGACGATCAAAGCTCTCACTCACATTCAATCGCAGAAGATCTTCAACGCTCTGCAATCCTACAATTCGATCACCCCCTTGATCAAGTTCTCTCATTTCACGGCCAACCAAGCAATTTTCCAAGCCTTGGACGGCGAGGATTGCATCCACATCATCGACCTCGACATAATGCAAGGCCTTCAATGGCCGGGATTGTTCCACATCCTCGCTTCCCGGTCCAAGAAGATCCGATCCATGAGAATTACCGGGTTCGGATCATCTTCCGCGTTGCTCGAGTCAACTGGGCGAAGACTGGCCGATTTCGCGCGCTCACTCGGTCTCCCCTTCGAGTTCCATATACTCGAGGGTAAAATAGGTAATTTGACCAATCTGAGTCAACTCGGTGTGAGACCGAGCGAGGCTACGGTTGTCCACTGGATGCACCATTGTCTGTACGACATAACGGGGAGTGATATAGGGGCGTTGAAATTGTTGACTTCGTTAAGACCGAAACTGATCACGATCGTCGAACAGGATTTGAGCCAGGGCGATAGTTTCCTTGGCAGATTCGTGGAGGCATTGCATTACTACAGCGCGTTGTTCGACGCGCTAGGGGATGGCTTAGGTGTGGATAGTCTAGAAAGGCATACGGTGGAACAGCAGTTGTTTGGGTCCGAGATTAGGAACATCGTGGCCGTGGGTGGGCCCAAGAGGACGGGGGAGATCAAATTCGAGAGGTGGGGGGAGGAGCTTATGCGGGTCGGTTTCAGGACCGTTTCGCTTGGAGGAAGCCCAGCGGCCCAAGCGAGTTTGTTACTCGGGATGTTCCCTTGGAAAGGGTACACATTGGTGGAGGAAAATGGGTGCTTGAAATTGGGGTGGAAGGATCTCTCATTACTCACCGCCTCTGCATGGCGACCGTCCGATTGA 1368 52.27 MLRSLVQSPISSSSNPKPNNPISTMKSKRGDHELTAGGSDSSVEEPSTKRPIVYGDTPISGEKTIEEREEEEEADEVVVPVKEVESNGLRLIGLLLQCAECVAVDNLHEASDLLPEIAELSSPFGSSPERVGAYFAHALQTRVISSCLGTYSPLTIKALTHIQSQKIFNALQSYNSITPLIKFSHFTANQAIFQALDGEDCIHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSALLESTGRRLADFARSLGLPFEFHILEGKIGNLTNLSQLGVRPSEATVVHWMHHCLYDITGSDIGALKLLTSLRPKLITIVEQDLSQGDSFLGRFVEALHYYSALFDALGDGLGVDSLERHTVEQQLFGSEIRNIVAVGGPKRTGEIKFERWGEELMRVGFRTVSLGGSPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWRPSD 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1182967 1184685 - Conep09aG0027700.1 Cone9ag0274 444437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0274 455 Pfam GRAS domain family 93 452 IPR005202 -
Cone9ag0274 455 MobiDBLite consensus disorder prediction 1 74 - -
Cone9ag0274 455 ProSiteProfiles GRAS family profile. 82 452 IPR005202 -
Cone9ag0274 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 71 451 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Cone9ag0274 455 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1134 Cone-Chr7:8539060 Cone9ag0274 Cone-Chr9:1182967 4.50E-134 dispersed
Cone8ag0777 Cone-Chr8:7763046 Cone9ag0274 Cone-Chr9:1182967 1.21E-49 dispersed
Cone9ag0110 Cone-Chr9:478390 Cone9ag0274 Cone-Chr9:1182967 7.02E-51 dispersed
Cone9ag0274 Cone-Chr9:1182967 Cone9ag1379 Cone-Chr9:10321643 1.12E-35 dispersed
Cone6ag0242 Cone-Chr6:1123729 Cone9ag0274 Cone-Chr9:1182967 6.91E-297 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46777 PF10252 PP28 2.50E-27 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0274 K27742 - vvi:100854772 672.159