Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0289 ATGGAGATGTCAAGAAATATTCTCTTCGGCATGTTTGCTGCTCTTGCCATTGTTCATTTGGTTCATGCACAGGATCAATCAGGCTTCATTAGCATTGATTGCGGGACATCGATGAATTCTAGCTACACGGACAAGACAACGGGGATAAATTACATCTCGGATGCAACCTTTGTACAAACCGGTGTAAGCAAGAGCATATCATCGGAATACAGGGTTGGTGCTCCTCAACAACAGTTCTGGTATGTTACGAGCTTCCCTGAAGGTGTCAGAAACTGTTACATTTTAAAACCTCCACAGGCCAAAGGTAATAAGTACTTGATCCGAGCAAGTTTCATGTACGGAGACTATGATGGTCTAAATACAGCACCAGTTTTCGATCTCCATATCGGAACTAATTTATGGAACTCTGTGAAAATTTCCAATGCGTCGACTGTAGTGATCAAAGAACTCGTTCATACTCCATCTAGATCTTCTATATATGTATGTCTTGTGAATACAGGCTCTGGAACACCTTTCTTATCAGCACTAGAGCTTCGCCCTTTGAGAAATGCAAGTTATAAAAGCGATTCTGCATCCTTAGCACTCTACCGTCGGTTGGATGTAGGTGCAGCAACCAATGGATCAGTAAGGTATGGCGATGACGCTTTAGATCGGATTTGGATGCCCTTTAAATTTGTAGATCGCAAACAGATAAGTACCGTATCGAAGGTTGATGATGGAATTCAAAATAGTTATCAATTACCTTCTGTTGTCATGGAGACTGCTATGATGACTACAAATGCTAGCAGTGCTTTCAGTTTTCATATCATACCCGAAAATCCTCATGCTCGGTATCATGTCTTTATGCATTTCGCTGAACTCGAAAAGCTTCAACCAAACCAATCAAGGGAACTCATTATTTATCAAAATGACCTCTACCTGAATGGGCCTTTCACACCCGATTACTTATACTCAACTACCATATTCACCACAACGCCCGTAAGTGGAACAAGGATAGACTATGCCATCTACAAAACCGAGAGTGCAACTCTTCCCCCATTTCTCAATGCACTCGAAGTCTATATAATGGTCGATGAGTCAGAGTCGCAAACCGACAAACAAGATATGAATGCTCTCTTGAATATCAAATCATTGTTTGGAGTGCGGAAAAATTGGCAAGGAGATCCATGTGCCCCGAGAACTCTGTTGTGGGATGGTCTTAATTGCAGCTATGGCACTCACGATCCTTATAGAATCACAACCTTGAACTTGTCCTCGAGCGGATTATCCGGGGAGATAGCTAGCTTCATATCTGATCTCACATTGATAGAGTATTTGGATTTATCGAACAATAGTTTAACTGGACCACTGCCCGGGTTTCTAATTCAAATGCCATCTCTAAAAGTCCTAGACTTAAAAGACAATAATCTCACTGGTTCGGTTCCAAGTGAGCTCATTCAAAGATCGAACAATGGATCCCTGCTATTGAGTGTTGGTGGGAATTCCAAGCTCTGTACCCTGGACTCATGCCAAAAGGAGGAGAAGAAAAAGAGTTCCACGGTTCCAGTTGTAGCATCAATTGTATCAGTGTTAGCCCTGATCCTCTTATCAGCGGCAATCGTGTGGGGCGTGAAATATCAAAAGAAAGCTTCGAAGGCAAATAATCCTTTCGGAAGACTCGGGTCTCTGGAGTCAAAGAAACAACAATTTATGTACTCTGAAATTCTGAGTATTACAAACAACTTGGAAAGGGAGCTCGGGAGAGGAGGATTTGGAACGGTCTACTATGGCTGCTTAAATAACAATGATGAGGTTGCCGTGAAGGTCCTCAAGTCATCCACCGCAGAAGGCTATAAAGAATTTCACACAGAGGTTAAACTTCTGCTGAGAGTACATCATGTCAACTTAACAAACCTTGTCGGGTATTGCATGGAAGCCACTAAATTGGTGCTTGTGTATGAGTACATGGCTAATGGAAACTTGCAAAGCCTACTTTCAGATAAAAAAGCCCATGTCTTGAGTTGGCTGGACAGAATGCAAATAGCAGTTGATGCAGCTCAAGGATTGGAGTATCTTCATGATGGTTGTAAGCCGCCCATTGTCCACAGAGATGTAAAATCTGCAAACATCCTCTTGAATGAAACTTTCAAGGCCAAAATGGCTGATTTTGGGCTATCCCGGAGTTATCCAACAGAAGGTGGTACTCATGTCTCCACAGTCGTTGCTGGGACACACGGATACCTCGATCCCGAGTTCTTTCAAAGTGGCTGGTTGACAAAGAAAAGTGACGTTTATAGCTATGGATCTGTTCTGCTCGAGATTGTCACAGGGCGGCCGGTGATAGTAATGAGGGAAGAGAGGACTCATATCAGTCAATGGGTCAGTTGGATGCTTGAAAATGGTGATATAAACAGGGTGGTTGATCAGAGATTACAAGGGGATTTTGAGATCAGTTCTGCTTGGAAAACTGTGGAGATAGCCATCTCATGCTTGTCGCAATCTTCAGATCGAAGGCCTACAATGAGTCAAGTTGTGATAGAGTTAAAGGACTGCTTGGCATTAGAGATGGCTAGGCAAAGGAACAGAAATGGGCCTGAGATGAGAAATTCTAATGTTATGAGCAGTAGGAATTTGGATGATGCTGACATGTATCCACTTGCAAGGTAG 2646 42.74 MEMSRNILFGMFAALAIVHLVHAQDQSGFISIDCGTSMNSSYTDKTTGINYISDATFVQTGVSKSISSEYRVGAPQQQFWYVTSFPEGVRNCYILKPPQAKGNKYLIRASFMYGDYDGLNTAPVFDLHIGTNLWNSVKISNASTVVIKELVHTPSRSSIYVCLVNTGSGTPFLSALELRPLRNASYKSDSASLALYRRLDVGAATNGSVRYGDDALDRIWMPFKFVDRKQISTVSKVDDGIQNSYQLPSVVMETAMMTTNASSAFSFHIIPENPHARYHVFMHFAELEKLQPNQSRELIIYQNDLYLNGPFTPDYLYSTTIFTTTPVSGTRIDYAIYKTESATLPPFLNALEVYIMVDESESQTDKQDMNALLNIKSLFGVRKNWQGDPCAPRTLLWDGLNCSYGTHDPYRITTLNLSSSGLSGEIASFISDLTLIEYLDLSNNSLTGPLPGFLIQMPSLKVLDLKDNNLTGSVPSELIQRSNNGSLLLSVGGNSKLCTLDSCQKEEKKKSSTVPVVASIVSVLALILLSAAIVWGVKYQKKASKANNPFGRLGSLESKKQQFMYSEILSITNNLERELGRGGFGTVYYGCLNNNDEVAVKVLKSSTAEGYKEFHTEVKLLLRVHHVNLTNLVGYCMEATKLVLVYEYMANGNLQSLLSDKKAHVLSWLDRMQIAVDAAQGLEYLHDGCKPPIVHRDVKSANILLNETFKAKMADFGLSRSYPTEGGTHVSTVVAGTHGYLDPEFFQSGWLTKKSDVYSYGSVLLEIVTGRPVIVMREERTHISQWVSWMLENGDINRVVDQRLQGDFEISSAWKTVEIAISCLSQSSDRRPTMSQVVIELKDCLALEMARQRNRNGPEMRNSNVMSSRNLDDADMYPLAR 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1245040 1248924 - Conep09aG0029200.1 Cone9ag0289 444452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0289 881 Gene3D Phosphorylase Kinase; domain 1 554 648 - -
Cone9ag0289 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0289 881 SMART serkin_6 573 845 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0289 881 SUPERFAMILY L domain-like 369 483 - -
Cone9ag0289 881 Gene3D Ribonuclease Inhibitor 367 490 IPR032675 -
Cone9ag0289 881 ProSiteProfiles Protein kinase domain profile. 573 845 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0289 881 PANTHER OS07G0107800 PROTEIN-RELATED 21 850 - -
Cone9ag0289 881 Gene3D Transferase(Phosphotransferase) domain 1 649 867 - -
Cone9ag0289 881 MobiDBLite consensus disorder prediction 852 881 - -
Cone9ag0289 881 FunFam Leucine-rich repeat receptor-like protein kinase 552 648 - -
Cone9ag0289 881 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 649 854 - -
Cone9ag0289 881 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524(InterPro)
Cone9ag0289 881 FunFam Leucine-rich repeat receptor-like kinase 367 499 - -
Cone9ag0289 881 Pfam Leucine rich repeat 412 470 IPR001611 GO:0005515(InterPro)
Cone9ag0289 881 Pfam Protein tyrosine and serine/threonine kinase 575 840 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0289 881 Pfam Malectin-like domain 32 355 IPR024788 -
Cone9ag0289 881 MobiDBLite consensus disorder prediction 856 870 - -
Cone9ag0289 881 SUPERFAMILY Protein kinase-like (PK-like) 557 839 IPR011009 -
Cone9ag0289 881 CDD STKc_IRAK 579 842 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1283 Cone-Chr20:8370029 Cone9ag0289 Cone-Chr9:1245040 9.28E-212 dispersed
Cone20ag1284 Cone-Chr20:8374939 Cone9ag0289 Cone-Chr9:1245040 2.02E-258 dispersed
Cone4ag1011 Cone-Chr4:8794506 Cone9ag0289 Cone-Chr9:1245040 6.43E-223 dispersed
Cone7ag1196 Cone-Chr7:8898235 Cone9ag0289 Cone-Chr9:1245040 1.92E-233 dispersed
Cone8ag0196 Cone-Chr8:1028510 Cone9ag0289 Cone-Chr9:1245040 2.10E-83 dispersed
Cone8ag0522 Cone-Chr8:3737160 Cone9ag0289 Cone-Chr9:1245040 7.54E-52 dispersed
Cone9ag0289 Cone-Chr9:1245040 Cone13ag1041 Cone-Chr13:8618068 3.77E-70 dispersed
Cone9ag0289 Cone-Chr9:1245040 Cone4ag0940 Cone-Chr4:7847132 3.19E-237 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83162 PF00085 Thioredoxin 6.30E-11 CL0172 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0289 - - - 0.0