Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0298 ATGAAGCTCTCTTCGTCCGGGTTTAATCACCAGACTTCTCTCGAGGAGGGGGAGAAGAAGTGTTTGAATTCGGAGCTATGGCATGCTTGTGCTGGCCCTCTAGTTTCGCTTCCCCAAGGAGGAAGCCGAGTAGTCTACTTTCCACAAGGTCACAGCGAGCAGGTTGCTGCTTCAACAAACAAGGAAGTGGATGCTCATATTCCCAATTACCCTAACCTACCCCCACAACTTATCTGCCAGCTTCATAATCTGACTATGCATGCTGATGTAGATACTGATGAAGTTTATGCTCAAATGACCTTGCAACCTCTCAATTCAGAAGAGCAAAAGGATTTGTACTTGCTTCCTGCTGAATTAGGCACACCTAGCAAACAGCCAACTAATTATTTCTGTAAAACATTGACTGCAAGTGACACTAGCACTCATGGAGGATTTTCAGTTCCTCGCCGGGCAGCTGAAAAAGTCTTTCCTTCCCTTGATTTCTCACAACAGCCTCCGGCTCAAGAACTAATAGCGAAGGATCTTCATTGTAATGAATGGAAATTTAGACATGTATTTCGAGGGCAGCCCAAGAGGCATCTTCTTACAACAGGATGGAGTGTGTTTGTCAGTGCAAAAAGACTGGTGGCTGGTGATTCAGTTATCTTTATATGGAATGAAAAAAATCAGCTGCTGGTGGGAATCCGTCGAGCAAACCATCCACAGATCATGATGCCTTCATCTGTTTTATCAAGTGACAGCATGCACATTGGCCTACTTGCTGCTGCAGCTCATGCAGCTGCTACCAATAGTCCCTTTACAATATTCTTTAACCCAAGGACCAGTCCTTCAGAATTTGTCATATCCCTGGCTAAGTATGTCAAAGCAGTCTATTACACACGGATTTCGGTGGGCATGCGATTTAGAATGCTGTTTGAGACTGAAGAGTCAAGTGTCCGTAGGTTTATGGGTACAATTACTGGAATAAGCGACTTAGATTCTGTTCGCTGGCCAAATTCCCATTGGCGCTCTGTGAAGGTTGGATGGGATGAATCTGCTGCTGGAGAGAAGCAACCGAGAGTATCTTTGTGGGAGATTGAGCCAATAACAACTTTTCCCATGTATCCATCTCCATTTGCACTTAGATTGAAGCGACCTTGGTCATCAGGACTGCCATCTTTCAATGGGGTTGGTGGAGATATGGGAATGCAATCCTTGAACTTCCAGGCCTTTGGAATGACGCCTCTATTGCAGTCAAGGCCGAATGATCTAATTTCCACTCAATTATCCGATGTATATCAAGCAATGGCAGCTGCTGCTGCTTTTCAAGATTCCAGGACCTTTGACTCCTTCAAGTGTCCTCAATCTCTTCTTCAATCCCCACGGACCCAAGATTCTTTCAGCGAATCTGCTGCTTTAGTCCAGAGACAAACCCTGGAGCAATCACAGGCTCAGAAGAAGACTTTCCTTCAAAGTTTTCAAGAAAACCAGGCTTCCTCTCAAGCTCAGCTTCTACAACAGTTACCGTGTTTCCATCCAGGTAGCAATCAACCGCCGCAGCAGCATCTTCAACAGTCCATGCACCTTCACCAGTCAATCCCTAATGTCATGTCTGCAATATCTAATCCCACATCAGTCACATCTGGGGTTTCGTCTATGCAAAGTATTTTAGGTTCGTTAGCACAGGATGGAGCTCCTTCTTTAGTCAACTTTTCCGGCATGGACTCCTCAATATCTTCTGCCTTTTTATCCAAGCAAGTTCCTGTAGAGCCTCCTCACTTTCCTTCTGGACCTACTGAAGGTGTAGTGGTCCAAGCTGACCAATTGGGGGTCCCACATTCAAATGTCTTTGAACTTGGAAATTTACCTCCACTTCCCTTTGGATGGCAATGTTCTAGTAATGATCTGTTGAATAATTTCTTACCTAGGGTTAACATGGATTCTTCTTCATCTCTTGTGCTGCCCAATGTTTCTCGAGAATTGAGCAATGCTGGCAGTGAAAATGATTTCTTGTCCATGCCCTTCTCTGCTCACAAATTTACAAGCTCTGGGCCCACTGATTTTGCACTCAACTCCAACATGAGAACTACAACTAGCTGTGCTGAAGAATCGGGCCTTTTGCAATCTTCTGAAAATTTCGAGCAAGTAGATCCCACCCCAAACAGAACCTTTGTGAAGGTACACATGTCAGGGTCCTTTGGAAGGTCACTAGACATATCTAGGTTTAGCAGCTACGGGGAGCTGCGAGGCGAGCTTGCTCGCATGTTTGGACTTGAAGGCCTCTTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGATATTCTTCTCCTTGGCGATGATCCTTGGCAGGAATTTGTAAACAACGTGTCGTATATCAAGATTCTTTCCCTGCATCAAATGCAGCAAATGGGAAAAGAAGGTCTTCTTAACACTCCTCCAGCTTCTTCTGTTCAAGCCCGCAAGATCTCAGATGGCGGCAATGGTTATTATGAGGACTATGAGAACCAGCAGGAAGGAAGAAACTAA 2526 45.21 MKLSSSGFNHQTSLEEGEKKCLNSELWHACAGPLVSLPQGGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNLTMHADVDTDEVYAQMTLQPLNSEEQKDLYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSQQPPAQELIAKDLHCNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLVGIRRANHPQIMMPSSVLSSDSMHIGLLAAAAHAAATNSPFTIFFNPRTSPSEFVISLAKYVKAVYYTRISVGMRFRMLFETEESSVRRFMGTITGISDLDSVRWPNSHWRSVKVGWDESAAGEKQPRVSLWEIEPITTFPMYPSPFALRLKRPWSSGLPSFNGVGGDMGMQSLNFQAFGMTPLLQSRPNDLISTQLSDVYQAMAAAAAFQDSRTFDSFKCPQSLLQSPRTQDSFSESAALVQRQTLEQSQAQKKTFLQSFQENQASSQAQLLQQLPCFHPGSNQPPQQHLQQSMHLHQSIPNVMSAISNPTSVTSGVSSMQSILGSLAQDGAPSLVNFSGMDSSISSAFLSKQVPVEPPHFPSGPTEGVVVQADQLGVPHSNVFELGNLPPLPFGWQCSSNDLLNNFLPRVNMDSSSSLVLPNVSRELSNAGSENDFLSMPFSAHKFTSSGPTDFALNSNMRTTTSCAEESGLLQSSENFEQVDPTPNRTFVKVHMSGSFGRSLDISRFSSYGELRGELARMFGLEGLLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSLHQMQQMGKEGLLNTPPASSVQARKISDGGNGYYEDYENQQEGRN 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1285154 1290133 - Conep09aG0030100.1 Cone9ag0298 444461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0298 841 SUPERFAMILY CAD & PB1 domains 712 791 - -
Cone9ag0298 841 CDD B3_DNA 129 230 IPR003340 GO:0003677(InterPro)
Cone9ag0298 841 Gene3D - 712 804 - -
Cone9ag0298 841 MobiDBLite consensus disorder prediction 806 822 - -
Cone9ag0298 841 Pfam AUX/IAA family 708 796 IPR033389 -
Cone9ag0298 841 Pfam B3 DNA binding domain 130 232 IPR003340 GO:0003677(InterPro)
Cone9ag0298 841 Gene3D - 128 231 IPR015300 -
Cone9ag0298 841 FunFam Auxin response factor 128 232 - -
Cone9ag0298 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 807 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone9ag0298 841 Gene3D - 294 366 - -
Cone9ag0298 841 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677(InterPro)
Cone9ag0298 841 ProSiteProfiles PB1 domain profile. 715 802 IPR053793 -
Cone9ag0298 841 SMART B3_2 130 232 IPR003340 GO:0003677(InterPro)
Cone9ag0298 841 FunFam Auxin response factor 710 804 - -
Cone9ag0298 841 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Cone9ag0298 841 Pfam Auxin response factor 256 338 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone9ag0298 841 FunFam Auxin response factor 294 366 - -
Cone9ag0298 841 MobiDBLite consensus disorder prediction 806 841 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0280 Cone-Chr1:1913667 Cone9ag0298 Cone-Chr9:1285154 6.88E-294 dispersed
Cone6ag0864 Cone-Chr6:4412479 Cone9ag0298 Cone-Chr9:1285154 2.64E-90 dispersed
Cone7ag1874 Cone-Chr7:12073372 Cone9ag0298 Cone-Chr9:1285154 1.69E-187 dispersed
Cone9ag0298 Cone-Chr9:1285154 Cone9ag0869 Cone-Chr9:4229505 5.63E-109 dispersed
Cone6ag0263 Cone-Chr6:1210550 Cone9ag0298 Cone-Chr9:1285154 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46779 PF12222 PNGaseA 3.50E-112 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0298 K14486 - mdm:103405131 1055.05