Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0315 ATGGCGAGAATGGCGTGCACGAACCGTATTCCAGCTCTACTTCTTCCATCGAAGTTGTCTTTCTTCAGAAATGACTCTCTATTCATCGGAAAGTCTCGCTACGTCGGCGTATTCGACTCTACACGGCGGTTCTCTTCTTCATCTAAGATTAGCATGAGCCTCAGAGCTGGCATCGTCGGCCTCCCTAATGTCGGAAAATCCACTCTCTTCAATGCCGTAGTTGAGAATGGCAGAGCTCAAGCTGCTAATTTCCCTTTCTGTACAATAGAGCCCAATGTAGGTATAGTTGCAGTTCCAGATCCTCGTCTTCAAGTACTTTCTGATCTCAGTAAATCTCAACGAGCAGTCCCAGCGTCTATAGAATTTGTAGATATTGCTGGCCTTGTAAAAGGCGCCAGCCAAGGAGAGGGATTGGGCAATAAATTTTTATCTCATATCCGGGAGGTAGATTCTATACTTCAGATTGAAAAGAGAATAGAGAAGCTCAAGAAAGGCAAGTCAAGGGATTCACAGTCCAAAATTAAGGAGGAAGCAGAAAAGTCTGCGCTGGAAAGAATCCAGCAGGCGCTTATGGATGGGAAACCTGCCCGATCAGTAACTTTAACAGATTTTGAAAAGGAGGCAATCAAACACATGTGCTTGCTTACAATGAAACCTGTGACATATGTGGCTAATGTTGCAGAAACTGATCTCGCCGAGCCTGAAAATAACCCTCATGTTAAAGACGTCATGAGCCTTGCATCGGAGTTGAAATCTGGAGTAGTGACTGTTTCGGCACAGGTTGAGTCTGAGCTTTCTGAACTTTCGTCTGATGAGAGATTAGAATATTTGGCATCTCTTGGTGTTAGTGAAAGTGGCCTTGGAAACCTTATCAGGACGACATATAGCCTGTTGGGTCTACGTACTTACTTTACTTCTGGCGAGAAGGAAACAAAAGCCTGGACCATACTTGCAGGAATGACTGCTCCTCAAGCTGCTGGAGTCATTCACTCAGACTTTGAGAAAGGTTTCATTCGAGCTGAGACGGTGGCTTATGATGATTATGTTGCTGCTGGTTCACTTGCTGCAGCGAGGGAGAAAGGACTTTTGAGGTCTGAAGGTAAAGAGTATGTTGTACAAGAAGGAGATGTCATGCTATTTCGATTCAATGTGTGA 1155 44.68 MARMACTNRIPALLLPSKLSFFRNDSLFIGKSRYVGVFDSTRRFSSSSKISMSLRAGIVGLPNVGKSTLFNAVVENGRAQAANFPFCTIEPNVGIVAVPDPRLQVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQIEKRIEKLKKGKSRDSQSKIKEEAEKSALERIQQALMDGKPARSVTLTDFEKEAIKHMCLLTMKPVTYVANVAETDLAEPENNPHVKDVMSLASELKSGVVTVSAQVESELSELSSDERLEYLASLGVSESGLGNLIRTTYSLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDYVAAGSLAAAREKGLLRSEGKEYVVQEGDVMLFRFNV 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1372487 1377482 - Conep09aG0031800.1 Cone9ag0315 444478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0315 384 PIRSF EngD 51 157 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cone9ag0315 384 PIRSF EngD 154 384 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cone9ag0315 384 Gene3D - 300 384 IPR012675 -
Cone9ag0315 384 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525(InterPro)
Cone9ag0315 384 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525(InterPro)
Cone9ag0315 384 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525(InterPro)
Cone9ag0315 384 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525(InterPro)
Cone9ag0315 384 Gene3D - 219 299 IPR027417 -
Cone9ag0315 384 Gene3D - 155 218 IPR023192 -
Cone9ag0315 384 Gene3D - 100 117 IPR012675 -
Cone9ag0315 384 PANTHER OBG GTPASE FAMILY 154 383 - GO:0005737(PANTHER)|GO:0016887(PANTHER)
Cone9ag0315 384 FunFam Ribosome-binding ATPase YchF 285 383 - -
Cone9ag0315 384 Gene3D - 56 154 IPR027417 -
Cone9ag0315 384 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 155 IPR031167 GO:0005525(InterPro)
Cone9ag0315 384 Pfam Protein of unknown function (DUF933) 300 383 IPR013029 -
Cone9ag0315 384 Pfam 50S ribosome-binding GTPase 56 164 IPR006073 GO:0005525(InterPro)
Cone9ag0315 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 322 IPR027417 -
Cone9ag0315 384 SUPERFAMILY TGS-like 300 381 IPR012676 -
Cone9ag0315 384 CDD TGS_YchF_OLA1 298 382 IPR013029 -
Cone9ag0315 384 CDD YchF 56 298 IPR041706 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0315 K19788 - - csv:101217443 592.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0306 Cone-Chr1:2296736 Cone9ag0315 Cone-Chr9:1372487 1.45E-70 dispersed
Cone5ag1540 Cone-Chr5:10583121 Cone9ag0315 Cone-Chr9:1372487 2.08E-69 dispersed
Cone6ag0279 Cone-Chr6:1292228 Cone9ag0315 Cone-Chr9:1372487 1.15E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40