Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0316 ATGAAAGGGTTTGATATAAGGGATAGGGTTGAAGACGCTCCGGAGCAATTTGAAGAAAATTCGACCGAAGGTACTGTGTTTGATGCATCACAGTACGCATTCTTTGGTAAAGACAGTGTTGAGGAAGTTGAGTTGGGGGGACTAGAAGATGAAGAGGATGACGTGCCTGTGGCTGGGACTGACGAGGAAGAGTTTTTGTTTGATCAGGAGTTCAACAAGGTAGTAAGTGGAGCAAGAAGTTCTGGAGTTAATGGTGATAGAGGATCCAGAGAGAGTTCATCTGTTACTGAATGGGCACAAGAAGATGGCTCTCCTAGTTGGCTTGATCAACGGGCATATAATCCTGAAATTGTGGCTGAAGGTAAAAGATGGTCATCACATCCATATTCTTCCCTTCATCCCGGAGAATCGACGTCTCTGTATAGGACATCATCATACCCTGATCAACAGCAACAGCTGCAGCAACAAAACCAACATTTCTCAAGTAGACCAATTCTAGTCCCAAATTCATCCTTTCCATCATATCCACCTGGGGCCGCTCCTGCACAGGCTTCACCAAACCCGTATTCAGGTCCCTTGAATATTCCATATGGTCCTGGTGGACCCAAGAATCTCACTTCCTTTCCCAATTCTCAAACTCACATGGCAGGTTTACCTCGTGGACCCCATTTTGGGGGAAATATGCCGCAACTCAGTGCTGGGCTTGCTATTAGCAGTGGACTTCTTAACCAACGGGTCAATCAAACCAGCTTACATCCCGGAGATCAATCTGGTCTGTTTAATAACATGTTGCAGCGACAATTACCTAATCTGAACGGCCTCTTGCCTTCACAGTTAATGCCACAATCACAGCAACAGCAACAGCAACAGCAACAGCGGCTCCATAATCCTGTTCCATCATCATTTGGCCATACAGCAGGCTTTCAAACACATGCTTTTAATTCCAATCTATCCTCAAGCCCACCAGTAATTAACAAGTTTGAAGGAATGCTTGGTCTACCAGATATAAGGAATCAAAGGCCGAATTCATCTCAGAGAGGTAGACAAGGCATGTGTTTTCCTCAGCAAGGCTTTGATAACAATAGTTTTAAGAGTGAAAATGGATGGCCACAATTTAGATCCAAGTATATGACAACTGATGAAATTGAGGGTATTCTTAGAGTGCAGCTTGCCGCCACACACAGTAACGATCCTTATGTTGATGACTATTACCACCAGGGTTGCCTTTCGAAAAAATCTGCTGGGGCAAAGTTAAGACACCATTTCTGCCCTAATCAGCTGAGGGATCTCTCATCTCATGCCCGTGTTAATACTGAGCCACATGCTTATCTTCAGGTTGATGCACTTGGTAGGGTTCCATTCTCATCAATTCATAGGCCTCGCCCTCTTCTTGAAGTAGAACCTCCTAATTTATCTGCTGCAGATAGAATTGAACACAAATTTTCAGATAAGCCCCTCGAAGAGGAGCCTTTACTGGCTGCTAGAGTCACAATTGAGGATGGTCTGTGTCTTCTTCTTGAAGTAGATGATATTGACCGTTTCTTGCAATTAAATCAGCTCCCAGATGGTGGGATCCAATTACAGAGACGCCGTCAGTTCTTGTTGGATCAATTATTAACATTACTTCAGTTAGTTGACCCACTTGGCAAAGGAGGTGATACAGTTGGGCTTACTCCCAAGAATGATTATGTATTTTTGCGGTTAGTTACTCTCCCAAAGGGCCGGAAGCTTCTAGCAAGATACCTTAAGTTGCTCTTCCCAGGTGGGGAGCTCTTGCGAATTGTGTGCATGGCCATTTTCCGCCATTTACGGTTCTTGTTTGGTAGCCTCCCTTCTGATTCAGCTGCAGTGGAAGCAACGTATAACCTTGCAAAGGTTGTTTCATTCTGTGTTAATGGTATGGATCTTGGTGCATTAAGTGCCTGTCTTGTAGCTGTGGTTTGTTCCTCAGAGCAACCCCCACTTCGCCCTCTTGGAAGCCCTGCTGGTGATGGAGCGTCCTTGATTTTGAAATCTGTACTAGAAAGGGCAACTGAGCTTTTAACCGATCCTCAAGCTGCAAAGCATTATAGTATAACTACGGAACTCTGGCAGGCTTCTTTCGATAAGTTCTTCGGTCTTCTTATCAAGTATTGTGTGAGCAAGTATGATACTGTTATCCAATCTATGCATATGCAAGCTCAGCCAAGTACTGCTACTGTTATTGGACCTGATTCCATGGCTATTGGTAAGGAAATGCCAGTTGATCTCTTACGTGCAAGTCTTCCCCACACAGACGAGCAACAAAGAAAGTTGTTACTGGATTTTGCTCAACGATCCATGCCTTTAGTTGGATCTAACAGTAATGTCGGGGATAGTTAG 2361 44.39 MKGFDIRDRVEDAPEQFEENSTEGTVFDASQYAFFGKDSVEEVELGGLEDEEDDVPVAGTDEEEFLFDQEFNKVVSGARSSGVNGDRGSRESSSVTEWAQEDGSPSWLDQRAYNPEIVAEGKRWSSHPYSSLHPGESTSLYRTSSYPDQQQQLQQQNQHFSSRPILVPNSSFPSYPPGAAPAQASPNPYSGPLNIPYGPGGPKNLTSFPNSQTHMAGLPRGPHFGGNMPQLSAGLAISSGLLNQRVNQTSLHPGDQSGLFNNMLQRQLPNLNGLLPSQLMPQSQQQQQQQQQRLHNPVPSSFGHTAGFQTHAFNSNLSSSPPVINKFEGMLGLPDIRNQRPNSSQRGRQGMCFPQQGFDNNSFKSENGWPQFRSKYMTTDEIEGILRVQLAATHSNDPYVDDYYHQGCLSKKSAGAKLRHHFCPNQLRDLSSHARVNTEPHAYLQVDALGRVPFSSIHRPRPLLEVEPPNLSAADRIEHKFSDKPLEEEPLLAARVTIEDGLCLLLEVDDIDRFLQLNQLPDGGIQLQRRRQFLLDQLLTLLQLVDPLGKGGDTVGLTPKNDYVFLRLVTLPKGRKLLARYLKLLFPGGELLRIVCMAIFRHLRFLFGSLPSDSAAVEATYNLAKVVSFCVNGMDLGALSACLVAVVCSSEQPPLRPLGSPAGDGASLILKSVLERATELLTDPQAAKHYSITTELWQASFDKFFGLLIKYCVSKYDTVIQSMHMQAQPSTATVIGPDSMAIGKEMPVDLLRASLPHTDEQQRKLLLDFAQRSMPLVGSNSNVGDS 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1377787 1382147 + Conep09aG0031900.1 Cone9ag0316 444479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0316 786 MobiDBLite consensus disorder prediction 77 103 - -
Cone9ag0316 786 MobiDBLite consensus disorder prediction 77 112 - -
Cone9ag0316 786 MobiDBLite consensus disorder prediction 1 16 - -
Cone9ag0316 786 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 20 775 IPR039900 GO:0000290(InterPro)|GO:0000290(PANTHER)|GO:0000932(PANTHER)|GO:0003723(PANTHER)|GO:0033962(PANTHER)
Cone9ag0316 786 MobiDBLite consensus disorder prediction 274 307 - -
Cone9ag0316 786 MobiDBLite consensus disorder prediction 130 169 - -
Cone9ag0316 786 MobiDBLite consensus disorder prediction 1 24 - -
Cone9ag0316 786 MobiDBLite consensus disorder prediction 125 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0316 K12617 - - mdm:103407022 917.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0966 Cone-Chr14:7838601 Cone9ag0316 Cone-Chr9:1377787 1.24E-237 dispersed
Cone15ag0954 Cone-Chr15:7566400 Cone9ag0316 Cone-Chr9:1377787 8.11E-241 dispersed
Cone6ag0280 Cone-Chr6:1295971 Cone9ag0316 Cone-Chr9:1377787 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0280 Cone9ag0316 . Cone15ag0954 . . . . . . . . . . . . . . . . . . . . Cpe01g00557 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001208 3 3 3 3 4 1 4 1 1 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 73