Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0339 ATGGCGGCGGTGGCGGGAAATGGTGGTTTGTTACTTGGCGGAGTAGGAGAAATTGGGAGGGCACATGCGGCCATGGCGATGGTTCAGTTGTTCAATGGAGGTTATCACGTTATCACCAAATTTGCTCTTAATGTTGGGATCAATCAGCTCGTTTTCTGCCTCTTTCGCGACCTCCTTGCCCTCTCTATCCTTGCCCCTGTCGCCTATGTCGGCGACCGTGAGAAACGGGTTCGCTTGTCAATGACTAGAGACCTGCTCCTGTCATTCTTCTTTCTCGGTTTAACTGGGATATTTGGAAATCAGCTTCTATTTCTTGTTGGTCTTGGCTACACAAATCCAACGTATGCTGCTGCCATACAGCCTTCAATTCCAGTCTTTACGTTTCTCCTTGCTACTATAATGGGTACAGAAAAAGTAAACTTGCTCAAATTTGAAGGTCAGGCAAAGGTTGTTGGTACGCTCATCTGTGTTTGTGGGGCCACATTAATGGTCTTATTCCGTGGCCCCGCTTTGATCGGAAATGCGGAATCAGACTTTTCTTCACATAATGAGATAAGTGCCAAGGGTCAACCAGAGCCTTCTGGATGGTTAATGTCTAGTTTTCTTGAGTATGGACTGGACCATTTTCACCTTGGAGTTTTATGCTTGATAGGAAACTGTATGTGCATGGCTGCTTTTCTGGCCATTCAGGCTCCAGTTTTAAAGAAGTATCCTGCCAGCTTATCAGTCACGGCATATTCATACTTTTTTGGTGCTATGTTGATGGTGATCACTGCACTATTTACCACCAATGAGTCGACAGACTGGAGCTTGACACAGTCCGAGTTTTTTGCCGTCGTGTATGCTGGAATTGTGGCATCTGCCCTTAACTATGGACTCCTGACTTGGTGCAATAAGATCTTGGGGCCTGCATTGGTTGCTCTTTACAACCCACTTCAACCCGCAGCATCTGCTTTTTTATCGAGAATCTTCATTGGAAGCCCTATCTATTTGGGAAGTGTTTTAGGAGGAATTTTAATAATTGCGGGTCTTTACTTGGTGACATGGGCTTCATATAGAGAACGGCAAGCGAATTTAGGAATGATTCTCCATGCGGCCCGGTCTACAGAACCACTTGTTCACAAGGAGTCATTGATTAACAGGATTTCTACATATCAGATAGGAAACCTTTTCTCAGGACCCTCCACTGCATTACCCAAATCTGTAGATTAA 1212 45.13 MAAVAGNGGLLLGGVGEIGRAHAAMAMVQLFNGGYHVITKFALNVGINQLVFCLFRDLLALSILAPVAYVGDREKRVRLSMTRDLLLSFFFLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPSIPVFTFLLATIMGTEKVNLLKFEGQAKVVGTLICVCGATLMVLFRGPALIGNAESDFSSHNEISAKGQPEPSGWLMSSFLEYGLDHFHLGVLCLIGNCMCMAAFLAIQAPVLKKYPASLSVTAYSYFFGAMLMVITALFTTNESTDWSLTQSEFFAVVYAGIVASALNYGLLTWCNKILGPALVALYNPLQPAASAFLSRIFIGSPIYLGSVLGGILIIAGLYLVTWASYRERQANLGMILHAARSTEPLVHKESLINRISTYQIGNLFSGPSTALPKSVD 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1479254 1481889 - Conep09aG0034400.1 Cone9ag0339 444502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0339 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 353 - -
Cone9ag0339 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 82 167 - -
Cone9ag0339 403 Pfam EamA-like transporter family 28 164 IPR000620 GO:0016020(InterPro)
Cone9ag0339 403 Pfam EamA-like transporter family 211 348 IPR000620 GO:0016020(InterPro)
Cone9ag0339 403 PANTHER WAT1-RELATED PROTEIN 24 355 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1945 Cone-Chr4:13711758 Cone9ag0339 Cone-Chr9:1479254 5.96E-74 dispersed
Cone7ag1859 Cone-Chr7:12018231 Cone9ag0339 Cone-Chr9:1479254 4.67E-73 dispersed
Cone8ag0969 Cone-Chr8:9136776 Cone9ag0339 Cone-Chr9:1479254 7.01E-44 dispersed
Cone9ag0339 Cone-Chr9:1479254 Cone9ag1116 Cone-Chr9:7336197 2.86E-51 dispersed
Cone6ag0305 Cone-Chr6:1399504 Cone9ag0339 Cone-Chr9:1479254 6.33E-273 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0339 - - - 0.0