Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0341 ATGGCTGATAATCAGCCTGTCCTTGCTTACCCAGTTCAAGTTAATTCACAATCTCTCCTTCAACTTTCCTTACTCCCCATCACTCTCAAGTTTGAGGAAGTCTTTTACAAGGTGAAATTGGAAGAGAAGGGATTACCATGTTGTGGAGGAGGATGGGCGACAAAAGAGAAGACAATTATAAATGGAATAACAGGAATGGTCTGTCCGGGAGAGTTACTAGCCATGCTTGGCCCGTCTGGCAGCGGAAAAACCACTCTTCTGACTGCTCTAGGCGGCCGTCTCTCCGGAAAATTATCCGGGAAGATCACTTACAATGGACTCCCATTTTCCGGCTCGATCAAAAGAAGAACCGGATTCGTAGCACAAGATGATGTCTTATACCCTCACCTAACCGTCACGGAAACACTCTTCTTCACTGCGCTCTTAAGGCTTCCCAAAAGCTTAACCAAAGAAGAGAAGGTTCAGAATGTGGAGCGGGTTATAGCCGAGTTGGGGCTGACCCGGTGCCGCAACAGCATGATTGGGGGACCACTTTTCAGGGGGGTTTCTGGCGGGGAAAAGAAGCGGGTGAGTATCGGCCAAGAAATGTTGATCAACCCGAGTTTGTTGTTACTGGACGAGCCGACTTCCGGGTTGGACTCGACCACGGCTCAACGGATCATGACCACCGTGAAAAGGCTCGCGAACGGGGGCCGCACGGTGGTCACCACCATTCATCAACCGTCTAGTCGGCTTTATCATATGTTTGATAAAGTGGTCTTGCTCTCTGAAGGGTATCCAATCTATAATGGCCCTGCTCCTACAGCTATGGACTACTTTTCTTCAATTGGGTTTCCCACTTCCATTACCGCCAATCCTGCTGATCTTTTACTTGATCTTGCCAACGGAATTGCCCCTGATTTCATGAATGCAAATGAGCAAGCTGAGAACATCGAAAAGGAGCAGAAACTAGTGAAGGATGCTCTCATCTCCGCTTACGAAAAGAACATCTCGGCACGGCTCAAAGCCGAGCTCTGCAGTCTCGACGTCAACAATTATACATACACAAAAGACTCTCCCACAAAAAGGGAAGAGAAAAGAGAGCAATGGTGCACCAGCTGGTGGTACCAGTTCACGGTGCTCCTGCAGAGAGGGCTAAGGGAAAGGAGATACGAAGCATTCAACAGGCTAAGAATCTTCCAAGTAACAAGTGTTGCCACGCTTGGCGGTCTGCTATGGTGGCATACTCCAACTTCCCACATTGAAGACCGCATCGCCTTGCTGTTCTTCTTCTCCGTTTTCTGGGGCTTCTACCCGCTCTACAACGCAGTCTTCACTTTTCCTCAAGAACGAACGATGCTCATCAAAGAACGCTCCTCCGGAATGTACCGCCTCTCGTCCTACTTCCTCGCCAGAACGATCGGCGATCTGCCATTGGAGCTCGCTCTCCCTACCATCTTCGTCTTCATCATCTACTGGATGGGCGGGCTCAAAGCCGACCCGATCACATTCATCCTATCCCTCCTCGTCGTCCTCTACAGCGTCCTCGTCTCGCAGAGCCTCGGATTAGCGGTCGGAGCTCTCCTCATGGACGTCAAGCAAGCCACCACTCTCGCCTCCGTCACGACTCTTGTTTTCCTAATAGCCGGCGGTTACTACATCCAGCAGATCCCGCCGTTTATTGAGTGGTTTAAGTATCTGAGCTATAGCTATTACTGCTACAAGCTTCTGCTCGGAGTACAGTATGATGAAGATGATTATTACGAGTGTGAAAAGGGGGTTCTGTGCAGAGTTGCAGATTTTCCGGCGGTTAGATCAATGGGTTTGGATCGTCTGTGGGTGGATGTATGTATAATGGCACTGATGCTGATCGGTTACCGTCTGATTGCTTATCTTGCGCTGCATCGAGTCAGGTCGAGGTGA 1902 49.79 MADNQPVLAYPVQVNSQSLLQLSLLPITLKFEEVFYKVKLEEKGLPCCGGGWATKEKTIINGITGMVCPGELLAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGLPFSGSIKRRTGFVAQDDVLYPHLTVTETLFFTALLRLPKSLTKEEKVQNVERVIAELGLTRCRNSMIGGPLFRGVSGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIMTTVKRLANGGRTVVTTIHQPSSRLYHMFDKVVLLSEGYPIYNGPAPTAMDYFSSIGFPTSITANPADLLLDLANGIAPDFMNANEQAENIEKEQKLVKDALISAYEKNISARLKAELCSLDVNNYTYTKDSPTKREEKREQWCTSWWYQFTVLLQRGLRERRYEAFNRLRIFQVTSVATLGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTIGDLPLELALPTIFVFIIYWMGGLKADPITFILSLLVVLYSVLVSQSLGLAVGALLMDVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWFKYLSYSYYCYKLLLGVQYDEDDYYECEKGVLCRVADFPAVRSMGLDRLWVDVCIMALMLIGYRLIAYLALHRVRSR 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1498424 1501789 + Conep09aG0034600.1 Cone9ag0341 444504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0341 633 Pfam ABC-2 type transporter 239 327 IPR043926 GO:0140359(InterPro)
Cone9ag0341 633 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0341 633 Pfam ABC-2 type transporter 369 575 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone9ag0341 633 Gene3D - 51 275 IPR027417 -
Cone9ag0341 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 275 IPR027417 -
Cone9ag0341 633 CDD ABCG_EPDR 26 264 - -
Cone9ag0341 633 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 624 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone9ag0341 633 SMART AAA_5 69 260 IPR003593 GO:0016887(InterPro)
Cone9ag0341 633 FunFam ABC transporter G family member 22 48 276 - -
Cone9ag0341 633 Pfam ABC transporter 61 210 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0341 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 282 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0341 633 Coils Coil 301 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0341 K05681 - - vvi:100247745 1040.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0480 Cone-Chr6:2378456 Cone9ag0341 Cone-Chr9:1498424 5.70E-261 dispersed
Cone6ag1037 Cone-Chr6:5879958 Cone9ag0341 Cone-Chr9:1498424 4.81E-202 dispersed
Cone7ag0920 Cone-Chr7:7217779 Cone9ag0341 Cone-Chr9:1498424 1.25E-84 dispersed
Cone9ag0341 Cone-Chr9:1498424 Cone3ag0271 Cone-Chr3:1406253 1.01E-48 dispersed
Cone15ag1013 Cone-Chr15:8457533 Cone9ag0341 Cone-Chr9:1498424 1.46E-64 wgd
Cone6ag0307 Cone-Chr6:1417423 Cone9ag0341 Cone-Chr9:1498424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79