Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0342 ATGGACGGAGATGACGGGGAAGGGTTGAGGTTGAGTAAAAGGTTCTCGGACAAAAATGCTGACGGCGAGGTTGATTATAAGACCAAGCCCGGCACCGCCTGGAGCCACTCGTATCTGAATCAGAAGCCATGGCATCCTCTTTCATATCCGAACCAACGTCGGAAGTGGATCGCCGAGCAGACTAACGCGCATCGTGAGCGCCGTGCGGAGGAGGTTGCTCGGGAGTATGCTCAGGAGCAGGAATTCTTTCGCCAGACCGCTCTTATCTCCAAGAAGGAGAAGGAGAAGGTGGAGATGATGAAAGCTGTTAGCTTCATGTATGTTCGGCCACCTGGTTATAATGCTGAAAGTGCCAAAGTTGCTGAGATTGCTGATGAGAGGAAGAAAGAGGATGGTAATCCCTCTGAATACCTGCCTGGTACCTCCGCTGAGATCCCTCAAGCATCTATGGCTGCTATAAACCAACCAGATCAGGAAAAGAAAAAATCAAGGGCAAAAGATGTTTTTGGACGTGCTTTGCCAACAGAAGAAGAATTTGAAGTCTTGAAGAACGCTCCACGGATGGAGACTGGTGCTCCTGGAAGGGCGAAACCTTTTGCAGTGGAAGTGCGCAATGTGAAATGTGTAAGATGTGATGTGTTTGGTCACCAAAGCGGTGATAGAGAGTGTCCTTTAAAGGATGTTATTATGCCTAATGAAGAGAGTCGATTGAAGAGAGATGATCCCTTGACTGCTATTCTAGCTCACACAGATCCAAGCGAGCCTCTTAAGTGGGAGCTGAAGCAAAAACCGGGAATCAGCCCTCCTCGTGGAGGGTTTAAACCAGACGATCCCAACCAGCAAATTATAGGTGAGGAGGACATATTTGATGAGTATGGAGGTTTCTTAAGTGGGGATAATATCCCTGAGTTGTTGACCAAATTTTCAGGCATACCAAAGAAGAAGCCTTCAAAGAAGAAAAGGCACAAAAAGCAGAGATCATCACCAAGTGGTAGAGAATTGAAAAATTTAGAGGAGGATGGGATGTCCTCTCCTTCTGAGGATGAGCAGAGGAAATTGAAGACAAAGAAGAAGAAAGATAAGATGAAAAGGGGTAATGATTCGCAGTCTAGGTCTTTGGACATTTCAGAGTACGATATGCATCACATAAGAGCCAGACACAAACACACTTATTCATCTGCAGATTCCGATTCTGATGCAAATTATAGAACTGCAAAGAGAAGAAATGATGAGTTTGACCTTGAAAGGAATCATGGAGGTAACAAGAGAAGATCCAAGCATTCTTATTCATCTGCCGACTCAGTTATTGAAGCACAACAAGGGAGTAAAAGTAGTCGCCGAAAGCAGTATCATTCTACATTGAAAGATTCTAAACCCCGAAAGGCATTCTAG 1392 45.19 MDGDDGEGLRLSKRFSDKNADGEVDYKTKPGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTNAHRERRAEEVAREYAQEQEFFRQTALISKKEKEKVEMMKAVSFMYVRPPGYNAESAKVAEIADERKKEDGNPSEYLPGTSAEIPQASMAAINQPDQEKKKSRAKDVFGRALPTEEEFEVLKNAPRMETGAPGRAKPFAVEVRNVKCVRCDVFGHQSGDRECPLKDVIMPNEESRLKRDDPLTAILAHTDPSEPLKWELKQKPGISPPRGGFKPDDPNQQIIGEEDIFDEYGGFLSGDNIPELLTKFSGIPKKKPSKKKRHKKQRSSPSGRELKNLEEDGMSSPSEDEQRKLKTKKKKDKMKRGNDSQSRSLDISEYDMHHIRARHKHTYSSADSDSDANYRTAKRRNDEFDLERNHGGNKRRSKHSYSSADSVIEAQQGSKSSRRKQYHSTLKDSKPRKAF 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1502866 1504951 + Conep09aG0034700.1 Cone9ag0342 444505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0342 463 MobiDBLite consensus disorder prediction 329 355 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 449 463 - -
Cone9ag0342 463 PANTHER CBF1 INTERACTING COREPRESSOR CIR 12 450 IPR040014 GO:0003714(InterPro)|GO:0003714(PANTHER)|GO:0005634(PANTHER)|GO:0045892(PANTHER)
Cone9ag0342 463 Pfam N-terminal domain of CBF1 interacting co-repressor CIR 44 79 IPR019339 -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 307 463 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 125 166 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 312 328 - -
Cone9ag0342 463 SMART Cir_N_3 43 79 IPR019339 -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 431 447 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 1 32 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 252 281 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 362 430 - -
Cone9ag0342 463 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0342 K06066 - - gmx:100500135 528.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0308 Cone-Chr6:1422458 Cone9ag0342 Cone-Chr9:1502866 5.37E-239 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g967 . . . . . . Bma07g01213 . . . . . . . . . Cpe02g00574 . . . . . . . . . . . . . . . . . Cone9ag0342 . . . . . . . Bda09g00474 Bpe08g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011573 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 28