Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0348 ATGGAGCAGTTGAAGACGATCGGCAGGGAGCTAGCGATGGGCTCGCAGGCAGGGTTTGGCCAATCGAAGGAGTTTCTGGATCTGGTCAAGTCGATCGGGGAGGCCCGATCGAAAGCTGAAGAGGAACGCATCGTTCTTCATGAGATCGAAACCCTAAAGCGCCGTCTCTCTGAACCAGATATCCCGAAGCGTAAGATGAAGGAGTACATAATTCGCCTCCTCTACGTCGAGATGCTCGGCCACGACGCCTCATTTGGATATATCCACGCCGTCAAGATGACGCACGACGACAATCTCCTCCACAAGCGTACTGGATACTTGGCTGTTACTCTGTTCCTCAGCGACGATCATGACCTCATCATCTTAATTGTCAACACGATTCAGAAGGACCTTAAGTCCGATAACTATCTCGTCGTTTGTGCTGCACTCAATGCAGTATGCAAGCTCATCAACGAGGAGACTATCCCTGCAGTGTTGCCGCAGGTTGTTGAGCTCTTCGGGCATTCAAAAGAGGCTGTCCGGAAGAAAGCTGTCATGGCTCTTCATCGCTTCTATCATAGGTCTCCATCTTCAGTTGCGCATCTAATCTCCAATTTTCGTAAGAGTTTGTGTGATCCTGATCCAGGGGTTATGGGTGCAACGCTTTGCCCGCTCTTTGATCTCGTTAGCGTAGATGTTAATTCGTATAAGGATTTAGTCATCAGCTTTGTAAGCATACTCAAACAAGTGGCAGAACGCCGATTGCCAAAGAGCTATGATTATCATCAGCTTCCCGCTCCATTCATACAGATCAGATTGCTGAAAATTCTGGCAGTTCTGGGAAGTGGTGATAAGCAGGCAAGCGAACACATGTATACTGTTGTTGGGGACTTATTCAGAAAGTGTGACTCATTGAGTAATATAGGGAATGCTGTCCTGTACGGGTGTATATGTTGTGTGTCCTCTATATTTCCTAATCCTAAGTTATTAGAAGCTTCCGCAGATGTGATTTCTAGATTCTTGAAGAGTGACAGTCATAACCTAAAATACATGGGGATTGATGCTCTTGGTCGACTTATAAAAATAAGTCCTGAGATAGCTGAACAACACCAGCTGGCTGTGATAGATTGCTTAGAGGACCCAGATGATACTTTAAAGCGAAAAACATTTGAACTGCTATATAAGATGACTAAGTCCTCCAACGTGGAAGTGATTGTTGATCGAATGATTGATTATATGATAAACATTAATGACAATCATTACAAGACCTATATTGCTTCTCGATGCGTCGAGCTTGGTGAGCAATTTGCACCTAGTAACCAATGGTTTATCCAGACCATGAATAAAGTCTTTGAGCATGCTGGAGATCTGGTGAATGTTAAGGTGGCACATAATCTGATGCGGATAATTGCTGAGGGGTTTGGAGAGGATGATGATACTGCAGATAGTCAGCTGAGATCATCAGCTGTGGAATCATATTTGCACATTCTCGGAGAGCCAAAGCTTCCATCTCTATTTCTCCAGGTCATTTGTTGGGTCCTGGGAGAATACGGGACGGCAGATGGAAAGTACTCTGCTTCTTATATTGCTGGAAAGTTGTGTGATGTTGCTGAGGCATATTCAGATGATGAAACTGTTAAGGCATATGCTGTTACGGCTCTGATGAAAACATATGCATTCGAAATAGCAGCTGGGAGAAAAGTGGACATACTACCAGAGTGTCAATCGTTGATTGAAGCGTTATCAGCTTCCCACTCTACAGATTTACAGCAACGCGCATACGAGTTGCAAGCTACCATAAACTTAGATGCCCAAGCGATCGAAATCATTTTGCCACGAGATGCAAGCTGTGAAGATATTGAGATTGACAAAAACCTTTCATTCCTCAACAATTATGTCCAGAAGGCGATAGAAAATGGAGCTCAACCCTACATCTCAGAAAATGAGCGTTCTGGAATGTCAAACAGCAGCAGCATCAGAAACCCTTATCAGCATGAAGCTTCAGGTCATGGCCTTAGATTCGAGGCATACGAGCAACCAAGGCCCCCTCCACCATCAAGAGTTCCTCCATCTTCTCTTGCTGTCTCAAACGAAATGGTTCCAGTGTCCGAATCATATTATCCCAGAGAGACACCCCAAGCCACTTCATTGCCCTCTGTATCCGATTCTGGGTCCTCTGAACTTAAACTAAGGCTTGATGGCGTTCAGAAAAAGTGGGGTAGGCCAACATATGCTTCTTCTAACCCGTCTTCATCAACTTCTTCCCAGAAAACAGTAAATGGGACTCCACAATTGGTTGGTCCGGGTTTGGTAACCTCAACAGCACGTGAAACTTACGATTCAAGGAGGGTTCAAGTTGAAATATCTCCTGAAAAGCAAAAGCTGGCAGCTTCATTGTTTGGAGGTTCATCAAAAACAGAGAAGAAATCCGCTTCTACTCATCATAAAAATCTAAGAACATGTAGTCAGGCTACTACTGAGAAGCCACATCCACCTAAGCCATCAGTTGCATCTAACGAAGTTTCAGTGGAGAAGAAGACTAATCCTCAACCTCCCCCTCCAGACTTGCTCGATTTAGGAGAACCATCTCTCCCAAGTAGTGCTGCTCCATATGTCGATCCTTTCAAGCAGTTGGAAGGGCTTCTTGACCCAACACAAGTCACTTCTTCTACCACAAATCATAGTGCCAAAGCACCTGATATTATGGCACTATATGCAGATGATACAAATCTTACATCTGAGTTCCCAAATGAAACTGTTAAAAAGGCTACCTCCGGTGGAGCTAGTATTCCACAACAGACACAGTTCACTAAGGGCACGAACCTGAAAGAGTCCTTGGAAAAGGATGCCCTTGTGAGGCAGATGGGTGTGAACCCTACAAGTCAAAATCCGAATTTGTTCAAAGATTTGCTTGGCTGA 2898 44.65 MEQLKTIGRELAMGSQAGFGQSKEFLDLVKSIGEARSKAEEERIVLHEIETLKRRLSEPDIPKRKMKEYIIRLLYVEMLGHDASFGYIHAVKMTHDDNLLHKRTGYLAVTLFLSDDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVLPQVVELFGHSKEAVRKKAVMALHRFYHRSPSSVAHLISNFRKSLCDPDPGVMGATLCPLFDLVSVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQLPAPFIQIRLLKILAVLGSGDKQASEHMYTVVGDLFRKCDSLSNIGNAVLYGCICCVSSIFPNPKLLEASADVISRFLKSDSHNLKYMGIDALGRLIKISPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMININDNHYKTYIASRCVELGEQFAPSNQWFIQTMNKVFEHAGDLVNVKVAHNLMRIIAEGFGEDDDTADSQLRSSAVESYLHILGEPKLPSLFLQVICWVLGEYGTADGKYSASYIAGKLCDVAEAYSDDETVKAYAVTALMKTYAFEIAAGRKVDILPECQSLIEALSASHSTDLQQRAYELQATINLDAQAIEIILPRDASCEDIEIDKNLSFLNNYVQKAIENGAQPYISENERSGMSNSSSIRNPYQHEASGHGLRFEAYEQPRPPPPSRVPPSSLAVSNEMVPVSESYYPRETPQATSLPSVSDSGSSELKLRLDGVQKKWGRPTYASSNPSSSTSSQKTVNGTPQLVGPGLVTSTARETYDSRRVQVEISPEKQKLAASLFGGSSKTEKKSASTHHKNLRTCSQATTEKPHPPKPSVASNEVSVEKKTNPQPPPPDLLDLGEPSLPSSAAPYVDPFKQLEGLLDPTQVTSSTTNHSAKAPDIMALYADDTNLTSEFPNETVKKATSGGASIPQQTQFTKGTNLKESLEKDALVRQMGVNPTSQNPNLFKDLLG 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1535060 1540368 - Conep09aG0035300.1 Cone9ag0348 444511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0348 965 Pfam Adaptin N terminal region 51 594 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone9ag0348 965 MobiDBLite consensus disorder prediction 639 657 - -
Cone9ag0348 965 MobiDBLite consensus disorder prediction 734 772 - -
Cone9ag0348 965 SUPERFAMILY ARM repeat 39 636 IPR016024 -
Cone9ag0348 965 MobiDBLite consensus disorder prediction 700 719 - -
Cone9ag0348 965 PIRSF AP4_epsilon 11 675 IPR017109 GO:0015031(InterPro)|GO:0030124(InterPro)
Cone9ag0348 965 PIRSF AP4_epsilon 879 965 IPR017109 GO:0015031(InterPro)|GO:0030124(InterPro)
Cone9ag0348 965 PIRSF AP4_epsilon 761 843 IPR017109 GO:0015031(InterPro)|GO:0030124(InterPro)
Cone9ag0348 965 MobiDBLite consensus disorder prediction 639 659 - -
Cone9ag0348 965 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 27 849 IPR050840 GO:0030124(PANTHER)|GO:0140312(PANTHER)
Cone9ag0348 965 MobiDBLite consensus disorder prediction 726 864 - -
Cone9ag0348 965 Gene3D - 11 607 IPR011989 -
Cone9ag0348 965 MobiDBLite consensus disorder prediction 701 719 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0348 K12400 - - rcu:8280139 1461.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0314 Cone-Chr6:1458182 Cone9ag0348 Cone-Chr9:1535060 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g954 . . . . . . . . . . . . . . . . Cpe02g00578 . . . . . . . . . . . . . . . . . Cone9ag0348 . . . . Blo03g00913 . . . . . . . . . . . . . . . Cpe06g00599 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008303 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33