Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0368 ATGGAGAGCTACCTCTTACTCTTTCATCTTGCTTTGACACTCCTCTTGTTCAACTCCCTGCTCATTTCTAAATCCGAACAAGTACAAGTCCAATCAATCAAAACCGATGCAGAAGCCCTTCTTGTGTTCAAGAAGAGGATTACTAAGGACCCAAGTGGAGTCTTGTCAAATTGGAAGCTAGCCAAAAATCCATGCACCTGGTATGGAATTACATGCTCTTCGGAATCACGAGCGGTTCATCTCGATCTTAGCGCATCTAGTCTAGGAGGAGATATCTCCCTGGACCCCTTGTCTTCTCTTGACATGCTATCTGTCTTGAAACTATCTACTAATTCCTTCACAATAAATTCGACCGGATTGCTTCGCCTTCCATATAATTTGCAATATCTTGATCTATCCCTTTCTGGGGTTATGGGCCTTGTTCCGGAAACTCTCTTCTCTAATCTTCCGAATCTTCTTACTTTCAATCTTGCCTTCAACAACGTAACAGGCTCATTACCCGAAAATCTGTTTTTGAATCCGAATAAGGTTCAAGAATTTGACCTCTCTTTTAACAACCTATCCGGTTCGATTTCGGGTTTAAGGCTACACACCAATTCTTGCAAATCATTGATAAATCTTGATCTTTCCGGAAACTGTCTAACTGGTTTTATCCCACCTTCTCTTTCAAATTGCACGGCTCTCCAAGCATTGAGTTTAACGGCTAATTTTCTCTCCGGTGAAATCCCAAACACTTTAGGAGAGCTCAAGAGTTTACAAACATTGGATCTTTCTAACAATCAACTAAGTGGTTGGATCCCTTCTGAATGGGAAAATACTTGCAATTCGCTTCAAGAACTTAAGCTTTTCCGTAACAACATTTCGGGTCTGATCCCAGCCTCTTTCTCCTCATGTACTTTGTTACAAGTCATTGATCTTTCCAACAATAATATTTCGGGTCCGTTACCTGATTCCGTCTTTAAGAACCTTATCTCCTTGGAAAGCTTGATTTTAAGCAACAACATTATTTCCGGACCGTTCCCTTCTTCCATATCATCCTGCAAGAAGCTAAAGGTCGTAGATTTAAGCTCCAATAAAATATCTGGCGAAATCCCGGAAAGTTTATGTCCTGGATGTGCATCGTTAGAGGAGCTTAGAATGCCGGACAATCTCATCACAGGAGTGATCCCTCCTCAGCTTTCACTCTGTCCTCAATTGAAGACAATTGATCTTAGCTTGAATTATCTGAATGGCTCGATCCCGGCTGAGCTCGGGAAGCTTCAGAATCTAGAACAGCTCATAGCATGGTTCAACGGGTTGGAAGGGAAAATCCCGCCCGAGTTGGGATCGTGCAGGAGTTTAAAGGATCTAATTCTCAACAATAATCAGTTAAGTGGCGGAATCCCTAGTGAATTGTTCAACTGTAGCAATCTGGAATGGATTTCGCTAACGAGCAATGGTCTCACTGGAGAAATCCCGAGGGAGTTTGGAGTTTTGACGAGACTGGCCGTTCTTCAACTAGGGAACAATAGCTTGAGTGGTCAGATTCCCAGCGAGCTAACAAATTGCAGCAGTTTGGTCTGGTTGGATTTGAACAGCAACAAGCTTACAGGAGAGATCCCGCCTCGACTCGGGAGACAGCTCGGGGCAAAATCATTGAATGGGATTCTGGCGGGAAACACTTTGGTCTTTGTCCGGAATGTCGGAAACTCGTGTAAAGGAATCGGAGGTTTATTGGAATTTGCAGGGATTCGACCCGAGAGGCTGCAACAAATTCCGACTTTGAAGAGCTGTGATTTTACGAGAATGTACTCGGGTGCGGTTTTGAGCCTCTTTACAAAATACCAAACATTGGAGTATCTTGATCTTTCTTACAACGAGCTCCGTGGGCGGATTCCAGAAGAAATGGGTGACATGGTGGCCTTGCAAGTTCTAGAGCTTTCTCACAACCAACTTTCCGGAGAGATCCCCTCCTCGCTCGGGAATCTTAAAAACTTGGGCGTGTTCGATGCGTCGGATAACAGACTACAGGGTCGTATCCCGGATTCGTTTTCAATGCTATCATTTTTGGTGCAAATCGATTTATCGAGCAATGAACTAACGGGGGAAATTCCACAAAGAGGACAGCTCAGCACTCTTCCGGCGAGCCAATATGCAAATAATCCAGGACTTTGCGGAGTTCCGTTGCCGGAATGCCGGAATGAATACAACCCTGGAACGAATCCGGGCGAAAATTCAAGTAGAGGAAGGAAGAAGTCAGAAGCTGCTTCTTATGCTAATAGCATTGTCTTAGGGGTCTTAATATCTATAGCTTGTATTTGCATATTGATCGTATGGGCGATAGCAATGCGAACAAGGAGAAAGGAGGCAGAAGAGGTTAAGATTCTTAACAGCTTGCAAGCATCCCATGCAGCTACAACATGGAAAATCGACAAAGAGAAAGAACCACTTAGTATCAATGTTGCTACTTTTCAAAGGCAGCTAAGAAAGCTCAAGTTTTCTCAACTAATCGAGGCTACTAACGGCTTCTCAGCCCAAAGCCTTATAGGGTCTGGAGGGTTCGGAGAAGTTTTCCGGGCCACATTGAAAGACGGGTCATCTGTTGCGATAAAGAAGCTGATAAGACTAAGTTGTCAAGGGGATAGAGAATTCATGGCCGAAATGGAGACTCTAGGGAAGATCAAACATAGAAACCTAGTACCCTTATTGGGTTATTGCAAGGTAGGCGAGGAACGCTTGCTCGTGTATGAATTCATGGAGTACGGAAGCCTTGAAGAGATGCTTCATGGAAGAACGAAAACACAGGAGAGGCGGGTCTTAACATGGGAAGAGCGGAAGAAGATTGCCAGAGGGGCAGCTAAAGGACTATGTTTCTTACACCACAATTGCATACCTCATATCATACATAGGGACATGAAGTCAAGCAATGTATTACTAGACAATGAAATGGAGGCAAGAGTTTCGGATTTCGGAATGGCACGGCTCATAAGTGCACTAGACACTCATCTTAGTGTGAGCACTCTAGCAGGCACTCCTGGCTACGTCCCGCCAGAGTATTACCAAAGCTTCAGGTGCACGGCAAAAGGCGATGTTTATTCGTGTGGGGTGGTGCTCCTTGAGCTTTTGACGGGGAAGCGGCCGACCGATAAGGAGGATTTTGGAGATACTAATTTGGTGGGGTGGGTGAAGATGAAGGTGAGGGAAGGAAAGCAGATGGAAGTGATCGATCCGGATTTGGCTTCGGTGAAGAAAGGGACTGATGAGGCAGAGGCGGAGGAGGTTAAGGAGATGGTGAGGTATTTGGAGATTAGTTTACAATGTGTGGAGGATTTTCCTTCCAGAAGGCCTAATATGTTGCAAGTGGTGGCGATGTTGAGAGAACTTATGCCGGGATGGGGCAATGGGAGCAGCAATAGCACTTGA 3402 44.86 MESYLLLFHLALTLLLFNSLLISKSEQVQVQSIKTDAEALLVFKKRITKDPSGVLSNWKLAKNPCTWYGITCSSESRAVHLDLSASSLGGDISLDPLSSLDMLSVLKLSTNSFTINSTGLLRLPYNLQYLDLSLSGVMGLVPETLFSNLPNLLTFNLAFNNVTGSLPENLFLNPNKVQEFDLSFNNLSGSISGLRLHTNSCKSLINLDLSGNCLTGFIPPSLSNCTALQALSLTANFLSGEIPNTLGELKSLQTLDLSNNQLSGWIPSEWENTCNSLQELKLFRNNISGLIPASFSSCTLLQVIDLSNNNISGPLPDSVFKNLISLESLILSNNIISGPFPSSISSCKKLKVVDLSSNKISGEIPESLCPGCASLEELRMPDNLITGVIPPQLSLCPQLKTIDLSLNYLNGSIPAELGKLQNLEQLIAWFNGLEGKIPPELGSCRSLKDLILNNNQLSGGIPSELFNCSNLEWISLTSNGLTGEIPREFGVLTRLAVLQLGNNSLSGQIPSELTNCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILAGNTLVFVRNVGNSCKGIGGLLEFAGIRPERLQQIPTLKSCDFTRMYSGAVLSLFTKYQTLEYLDLSYNELRGRIPEEMGDMVALQVLELSHNQLSGEIPSSLGNLKNLGVFDASDNRLQGRIPDSFSMLSFLVQIDLSSNELTGEIPQRGQLSTLPASQYANNPGLCGVPLPECRNEYNPGTNPGENSSRGRKKSEAASYANSIVLGVLISIACICILIVWAIAMRTRRKEAEEVKILNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAQSLIGSGGFGEVFRATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEFMEYGSLEEMLHGRTKTQERRVLTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSCGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVREGKQMEVIDPDLASVKKGTDEAEAEEVKEMVRYLEISLQCVEDFPSRRPNMLQVVAMLRELMPGWGNGSSNST 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1634768 1638286 + Conep09aG0037600.1 Cone9ag0368 444531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0368 1133 Pfam Leucine Rich Repeat 398 420 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine Rich Repeat 470 491 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine Rich Repeat 518 538 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine Rich Repeat 495 516 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine Rich Repeat 203 225 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 SUPERFAMILY Protein kinase-like (PK-like) 817 1118 IPR011009 -
Cone9ag0368 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0368 1133 Pfam Brassinosteroid receptor island domain 547 605 IPR045381 -
Cone9ag0368 1133 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Gene3D Phosphorylase Kinase; domain 1 795 911 - -
Cone9ag0368 1133 Gene3D Transferase(Phosphotransferase) domain 1 912 1125 - -
Cone9ag0368 1133 ProSitePatterns Protein kinases ATP-binding region signature. 842 865 IPR017441 GO:0005524(InterPro)
Cone9ag0368 1133 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Cone9ag0368 1133 CDD STKc_IRAK 842 1121 - -
Cone9ag0368 1133 FunFam Leucine-rich repeat receptor-like protein kinase TDR 199 463 - -
Cone9ag0368 1133 SMART LRR_typ_2 249 272 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 517 540 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 149 173 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 632 656 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 445 468 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 298 322 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 492 516 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 420 444 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 274 297 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 323 347 IPR003591 -
Cone9ag0368 1133 SMART LRR_typ_2 100 123 IPR003591 -
Cone9ag0368 1133 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cone9ag0368 1133 FunFam serine/threonine-protein kinase BRI1-like 2 912 1129 - -
Cone9ag0368 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 579 1121 IPR050647 -
Cone9ag0368 1133 PRINTS Leucine-rich repeat signature 249 262 - -
Cone9ag0368 1133 PRINTS Leucine-rich repeat signature 204 217 - -
Cone9ag0368 1133 ProSiteProfiles Protein kinase domain profile. 836 1122 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0368 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 603 725 - -
Cone9ag0368 1133 SUPERFAMILY L domain-like 59 272 - -
Cone9ag0368 1133 SUPERFAMILY RNI-like 485 699 - -
Cone9ag0368 1133 FunFam serine/threonine-protein kinase BRI1-like 2 35 147 - -
Cone9ag0368 1133 FunFam serine/threonine-protein kinase BRI1-like 2 797 911 - -
Cone9ag0368 1133 Pfam Leucine rich repeat 604 645 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine rich repeat 325 385 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 Pfam Leucine rich repeat 251 311 IPR001611 GO:0005515(InterPro)
Cone9ag0368 1133 SMART serkin_6 836 1122 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0368 1133 Gene3D Ribonuclease Inhibitor 174 725 IPR032675 -
Cone9ag0368 1133 Pfam Protein kinase domain 838 1049 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0368 1133 FunFam Leucine-rich repeat receptor protein kinase EMS1 464 557 - -
Cone9ag0368 1133 Gene3D - 550 606 - -
Cone9ag0368 1133 SUPERFAMILY RNI-like 206 535 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1315 Cone-Chr6:10561015 Cone9ag0368 Cone-Chr9:1634768 3.50E-167 dispersed
Cone9ag0368 Cone-Chr9:1634768 Cone9ag1263 Cone-Chr9:9346800 2.25E-160 dispersed
Cone6ag0332 Cone-Chr6:1569748 Cone9ag0368 Cone-Chr9:1634768 0 wgd
Cone6ag0292 Cone-Chr6:1342560 Cone9ag0368 Cone-Chr9:1634768 5.40E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83164 PF00201 UDPGT 3.60E-26 CL0113 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0368 - - - 0.0