Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0371 ATGCCGGCGCGAAATGTGGTTATACCGGACAAAATGCAGTTTCCTAGTGGCGGCGGCGGCTTTGGTGGTGGTGGCGGCGGCGGCGAGGTCTACCAACCACTCCATAGACACTTCTTTCCTGATGAGCGTGATGGCTTTATCTCGTGGTTAAGAGGCGAATTTGCTGCTGCAAATGCGATCATAGATTCGCTTTGGCATCATTTACGTTCAGTAGGGGAGCCAGGGGAATATGATGTGGTTATAGGGTGTATACAGCAAAGACGGATGAATTGGAACCCTGTGCTTCATATGCAGACGTACTATTCGGTGGTGGAAGTGACAGAGGCATTGCAGCAAGTTGCTATGAAGAAGCAGAATAGGCACAGGGAGAATAGGAGATATGGGGTAGGGTTTAAGGCAGCCAAGGAAGGGCTTTATTCTAATGTAGAAGCTTATAATCGTAATGGGAATTCTTCTGGTTTTATGGGGTCGGAGAGACTCGAGCTAGTAAGCCAGAAGCGGGAAGAGGCAAAGTCGGTAAACGAGGTCGAGAAATCAAGTGATAAGGATTCAGCCTCTACGGAGGAGAAAAAGGATGCTATTGCAAAAGTTCATACAGCTGAGGGATGCAACCCAAATTCTAAAGAGAAGGATTTGGGTACCATCCAACATCAAAATGAGAAGAATCTTGCTATTTCCCCAAAAACGTTCGTTGCCACTGAGATGTTTGATGGAAAGATGGTTAATGTGGTGGATGGATTGAAATTTTATGAGGAAGTGTTTAATCATGGGGAGGTGTCAAAACTCCTTACATTGGTAAATGATATGAGGGCTCTAGGGAAAAAAGGACAACTTCAAGGTCAAACGTATGTGGTCTCAAAGAGGCCAATGAAGGGACATGGAAGAGAAATCATCCAATTAGGTCGTCCTGTTGCTGATACACCTCATGATGTTGAAAATGCTACAGATACCCCAAAAGATCAGAGAGTAGAAACGATTCCTTCCATGCTTCAAGATATTATTGAACGCTTGGTTGGCATGCAAGTTATGACTGTGAAGCCAGACTCTTGCGTCATTGATATTTATAACGAGGGTGATTACTCACAGCCTCACTTATGGCCTCCCTGGTTTGGAAGGCCTATCTGTGTCCTCTTTTTGACAGAATGTGAAATGACATTTGGAAGAGTATTTGGGATAGACTATCCAGGGGATTATACAGGTTCCCTTAAACTGTCTCTTGATCCTGGATCACTGCTTTCAGTGGAAGGAAAATCCACAGATTTTGCAAGGCATGCAATTCCCTCCATCCGCAAACAACGAATACTTGTCACTTTGATCAAGTCACAACCGAAGAAAGCTCCTCCACCCACTGATGCTCACCGTTTGTCTTCATCCAATGGAGCTCCGTCATCCCACTGGGGCCCACCCAGTAGACCCAACCATATCCACCATCCCGTCGGGCACAGTCATTATCCAGTACCTCCTCAAACAACTGGGGTATTATCAGTACCACCCGTCCATCCCCAAATCCTGCCTCAAAATGGAATCCAGCCTATGTTCATGCCTGCCCCTCTTCTGCCACAAGCCATGCCTTTTTCATCCCCTTTTCCTGCTGCCCCTTCAAGGCATCCTCCACCTCGCCTCCTTGCTCCTGGAACTGGAGTTTTCCTCCCGCCTCCAGGTTCTGGTAATTCTTCATCATCCCAACAGTTACCAAATCAGTCAAGTGAGACGATTCCTTCTACGGTGGAGACTGGCTCCATGCTGGAAAAAGAAAATGGTTCTGTAAAATTCGTTCCTAATACAACTGCAAATGGAAAACTGGATGGGAAAATTCAAAGACAGGATAACAATGGAAATTCTCAAGGGACTGGAAATAGTACCGCAGCAGCAGCAGAATCAGTAAAGGGAGAGCAGCAGCTAAGTGGTGATGGTACGGTCACAAATTGTTCGTTGATATGGGTTCGTGTATTTCGATTGGATCTGATATGCTGCATTAGGATTTTAGGAGAAAATATCTTTACTGGAACTCTCATGGCAATGCCAGCAAAAAATGTGGTTATACAGGATAAGATGCCGTTTCCTAGTGGCGGGGGTGGTGAGGTGTACCAACCACTCCACCGACAGTGGTTTCCGGATGAGCGTGATGACTTCATCTCGTGGTTAAGAGGTGAATTTGCTGCTGCAAATGTGATTATAGATTCGCTTTGCCATCATTTACGTTCAGTAGGGGAGCTGGGGGAGTACGATGTGGCCATAGGGTGTATACAGCAGAGACGGTTTAATTGGAATCCTGTGCTTTATATGCAGAAGTACTTTTCAGTGGTGGAAGTGACAGAAGCATTGCAGCAAGTTGCTTTGAAGAAGCAGAATAGGCACAGGGACTGTAGGAGGTATGGGGGAGGGTTTAAGCCGGCCAAGGAACAGCTTTATTCCAGAGTAGAATCTTATAACCTTAATGGGAATTCTTCTGGTTTTGCGGGTTCCGAGAAAGTAGAGCAAGTGAGCCAGAAACGGGAAGAAGTTAAGTTGGTAGATAAGGTTGAGAAATTAGAGGGTAAGGATTCAGCAGTTTCTGAGGAGGACAAAAAGGATCCTATTGCGAAAGTTCATACAGATAGGAAATCTAAGAGTTTAGGAATCTCAGAAGGAAATACATCTGGGAATATAGAACCTGAAATTGAAATAGTAGATGATGGATGCAATCCAAGTTCTAAAGAGAGGGATTTGGAATCCATCCAGGATCAGAATGAGAAGAATCATGCTATTTTTCCAAAAAGATTTGTTGCCACTGAGATGTTTGATGGAAAGATGGTTAATGTGGTGGATGGACTGAAATTTTATGAAGGATTGTTCAATCAAGTGGAGCTTTCAAATCTCCATTCATTGGTAAATGATATGAGGGCTCGAGGGAAAAAAGGACAACTTCAAGGTCAAACATATGTGGTCTCAAAGAGGCCGATGAAGGGACATGGAAGGGAAATCATCCAATTGGGTCGCCCTGTTGCTGATGCACCTCATGATGATGAAAATGCTGCAGATCAGAGAGTAGAGTCAATTCCTTCCTTGCTTCAAGATATTATTGAACGCTTGGTTGGCGTGCAAGTTATGACTGTGAGGCCAGATTCTTGCGTCATTGATATTTATAATGAGGGTGATTACGCGCAGCCTCATGTGTGGCCTCAATGGTTTGGAAGGCCTATCAGCGTCCTCTTTTTGACAGATTGTGAAATGACGTTTGGAAGAGTGATTGGAATAGACCATCCAGGGGATTATAGAGGCTCTCTTAAACTGTCTCTCGCTACTGGATCCCTGCTTTCAATGGAAGGAAAATCCGCAGATTTTGCAAGACATGCAATTCCTTCCATCCGAAAACAACGCATTCTTGTTACTTTTACGAAGTCGCAACCAAAGAAAGCTCCACCAACTGATGCTCACCAACTAAATTCAACCAATGTAGCTCCATCTCCCCACTGGGTCCCACCCAGTAGACCCAACCATATCCGCCATCCTGTTAGTGTCGGGCACAGTCATTATCCAGTACCTCCTCCAGCAACAGGGGTATTACCAGTACCACCTGTTCGTCCCCAAATTCTGCCTCAAAATGGAGTCCAGCCTATGTTTGTGCCCACCCCTCTTCTGCCGCAAGCCATGCCTTTTCCTTCACCGTTTACTGGACCGCCTTCTAGGCATCCTCCACTTCATCTCCTTGCTCCTGGAACTGGAGTTTTTCTCCTGCCTCCGGGCTCTGGTAACTCTTCATCTCAACAGTCATCAAATTTGGCAAATGAGACGAATTCTTCATCTACAGTGGAGACTGGCTCCAAGCCAGAACAGGGGAATGTTCAGGTAAAATCGTCTTCGAATATAAGTGCCTCTCCAAAAGGGAAGTTGGATGAGAAAGCTCAAAGACAAGATTGCAATGGAAATTTTGAAGGAATCGAAAACAGTTTGATAGCAGTAAATGGCGAACAACAACCAAGTGGTAACAGTATGGTTTCAAGTAAGCCAGTCCGAGCAGCTTAG 4005 45.22 MPARNVVIPDKMQFPSGGGGFGGGGGGGEVYQPLHRHFFPDERDGFISWLRGEFAAANAIIDSLWHHLRSVGEPGEYDVVIGCIQQRRMNWNPVLHMQTYYSVVEVTEALQQVAMKKQNRHRENRRYGVGFKAAKEGLYSNVEAYNRNGNSSGFMGSERLELVSQKREEAKSVNEVEKSSDKDSASTEEKKDAIAKVHTAEGCNPNSKEKDLGTIQHQNEKNLAISPKTFVATEMFDGKMVNVVDGLKFYEEVFNHGEVSKLLTLVNDMRALGKKGQLQGQTYVVSKRPMKGHGREIIQLGRPVADTPHDVENATDTPKDQRVETIPSMLQDIIERLVGMQVMTVKPDSCVIDIYNEGDYSQPHLWPPWFGRPICVLFLTECEMTFGRVFGIDYPGDYTGSLKLSLDPGSLLSVEGKSTDFARHAIPSIRKQRILVTLIKSQPKKAPPPTDAHRLSSSNGAPSSHWGPPSRPNHIHHPVGHSHYPVPPQTTGVLSVPPVHPQILPQNGIQPMFMPAPLLPQAMPFSSPFPAAPSRHPPPRLLAPGTGVFLPPPGSGNSSSSQQLPNQSSETIPSTVETGSMLEKENGSVKFVPNTTANGKLDGKIQRQDNNGNSQGTGNSTAAAAESVKGEQQLSGDGTVTNCSLIWVRVFRLDLICCIRILGENIFTGTLMAMPAKNVVIQDKMPFPSGGGGEVYQPLHRQWFPDERDDFISWLRGEFAAANVIIDSLCHHLRSVGELGEYDVAIGCIQQRRFNWNPVLYMQKYFSVVEVTEALQQVALKKQNRHRDCRRYGGGFKPAKEQLYSRVESYNLNGNSSGFAGSEKVEQVSQKREEVKLVDKVEKLEGKDSAVSEEDKKDPIAKVHTDRKSKSLGISEGNTSGNIEPEIEIVDDGCNPSSKERDLESIQDQNEKNHAIFPKRFVATEMFDGKMVNVVDGLKFYEGLFNQVELSNLHSLVNDMRARGKKGQLQGQTYVVSKRPMKGHGREIIQLGRPVADAPHDDENAADQRVESIPSLLQDIIERLVGVQVMTVRPDSCVIDIYNEGDYAQPHVWPQWFGRPISVLFLTDCEMTFGRVIGIDHPGDYRGSLKLSLATGSLLSMEGKSADFARHAIPSIRKQRILVTFTKSQPKKAPPTDAHQLNSTNVAPSPHWVPPSRPNHIRHPVSVGHSHYPVPPPATGVLPVPPVRPQILPQNGVQPMFVPTPLLPQAMPFPSPFTGPPSRHPPLHLLAPGTGVFLLPPGSGNSSSQQSSNLANETNSSSTVETGSKPEQGNVQVKSSSNISASPKGKLDEKAQRQDCNGNFEGIENSLIAVNGEQQPSGNSMVSSKPVRAA 1334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1652969 1661738 - Conep09aG0037900.1 Cone9ag0371 444534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0371 1334 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 41 584 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1129 1150 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 552 582 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 529 636 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1212 1227 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1240 1287 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 441 492 - -
Cone9ag0371 1334 SUPERFAMILY Clavaminate synthase-like 927 1125 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 589 636 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 452 466 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 529 546 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1312 1328 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1212 1334 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 1129 1152 - -
Cone9ag0371 1334 MobiDBLite consensus disorder prediction 165 190 - -
Cone9ag0371 1334 SUPERFAMILY Clavaminate synthase-like 235 437 - -
Cone9ag0371 1334 Gene3D - 922 1134 IPR037151 -
Cone9ag0371 1334 Gene3D - 231 446 IPR037151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0890 Cone-Chr11:7330882 Cone9ag0371 Cone-Chr9:1652969 4.13E-54 dispersed
Cone17ag0460 Cone-Chr17:2180504 Cone9ag0371 Cone-Chr9:1652969 5.87E-61 dispersed
Cone18ag0669 Cone-Chr18:3535668 Cone9ag0371 Cone-Chr9:1652969 7.33E-53 dispersed
Cone20ag0884 Cone-Chr20:6440372 Cone9ag0371 Cone-Chr9:1652969 4.48E-62 dispersed
Cone6ag0336 Cone-Chr6:1594809 Cone9ag0371 Cone-Chr9:1652969 1.94E-181 dispersed
Cone6ag0337 Cone-Chr6:1597228 Cone9ag0371 Cone-Chr9:1652969 6.25E-106 dispersed
Cone6ag1680 Cone-Chr6:12759498 Cone9ag0371 Cone-Chr9:1652969 1.18E-37 dispersed
Cone9ag0371 Cone-Chr9:1652969 Cone9ag1602 Cone-Chr9:11477375 1.97E-35 dispersed
Cone6ag0335 Cone-Chr6:1589392 Cone9ag0371 Cone-Chr9:1652969 1.27E-299 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39