Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0376 ATGGGTATGAAGATGCAGCAGCATAGCCATGGCCACCACTCAGTTTCAGTGAGATTAAACGAGCAAATAGGGACCAAAAAAGGTTACACCTTTATTCAATCAAATAGGGCTTGGCTTCCAAAATTCCTTTTTCTATGGGTCATGGTGGTTGCATTCATCAGCATATCAATCTATAATGGCATGGATGCTGACACTAAAGTGAGAAGGAAAGAAGTTCTAAGCAGCATGTGTGATCAGAGAGCAAGAATGTTACAAGATCAATTCAATGTCAGTGTTAATCATGTCCATGCCCTTGCCATTCTTGTTTCCACCTTCCATTACTTGAAGGACCCGTCTGCCATTGATCAGGGGACTTTTGCGGAGTATACGGCCAGAACGGCTTTTGAGCGGCCTCTACTTAGTGGCGTGGCCTATGCACAGAGAGTATTAAATTCAGAAAGGGAAAGTTTTGAGAATAAACATGGTTGGACCATAAAAACAATGGAGAGGGATCCTTCCCCTGTTCGAGATGAATATGCTCCTGTTATATTTTCTCAAGAAACCGTGTCTTACATCGAATCTCTCGATATGATGTCAGGGGAGGAGGATAGAGAAAACATTTTGAGGGCAAGTGCTACTGGAAAAGCTGTTCTAACAAGCCCTTTTAGGCTTCTTGGCTCTCATCATCTTGGAGTTGTTCTGACATTTCCTGTTTACAAATACAAACTATCTCCAAACCCGCCAGTTGAAGAGCGGACTCGAGCAACAGCAGGATATATTGGAGGGGCATTTGATGTAGAGTCTCTTGTGGAGAATTTGCTCGGGCAATTAGCAGGGAACCAAGCTATCTTAGTGAATGTGTATGACATTACAAATTCTTCCGATCCACTTATCATGTATGGTCATCAAAATCAAGAAGGCGACTTGTCTCTTTTGCATGAGAGCAAGCTTGATTTTGGAGATCCATTCAGAAAGCATCAAATGATCTGCAGGTATCACCAGAAGGCACCCACTTCATGGCCTGCTCTCACTATGGCATTCTTATTCTTCGTGATTGGTTTATTACTTGGCTATATCTTATATGGAGCAGCAACTCACATTGTTGAGGTAGAGGATGATTTCCATGAAATGCAGGAACTAAAAGTTCGAGCAGAAGCTGCTGATGTGGCAAAATCTCAGTTTCTAGCAACTGTATCCCATGAAATTAGGACCCCCATGAACGGCATACTTGGAATGCTTGCTCTGCTTTTGGATACGGATTTGAGTTCTACTCAGAGGGACTACGGTCAAACTGCACAGGCCTGTGGAAAGGCATTGATAGCATTGATAAATGAGGTGCTTGACAGGGCAAAGATTGAAGCTGGAAAGTTAGAGCTGGAAGCAGTTCCTTTTGATCTTCGGTCCATAGTTGATGATGTTTTGTCTTTGTTTTCTGAAAAGTCGAGAAACAAGAGCATAGAGTTGGCGGTTTTTGTTTCTGATAAAGTTCCAGCGATTGTTATGGGAGATCCAGGAAGATTCAGACAGATTATAACAAATCTTGTGGGCAATTCTGTTAAATTCACTGAACAAGGACACATATTTGTCAAAATCCACGTCGCCGAGCACCCAAAGGCTTTTACCGAGTCAAAATCTGAACCTTGTATGAATGGAAGATTAAACGACGCTCCATTCATATCAACCGAGTGTAAGTTCAAAACCTTAAGTGGGTTTGAGGCAGCTGATGACCAGAACAGTTGGGATAGCTTCGAGCACTTAACAATGGGGGGAGATGATTCCTTCCAATCTGACAATTCTTCTTCTTCTTCTTCAACTACCATGAATGTTTTTAATGAATGTTCCGAGCAAGTCACTTTAATGGTCTCTGTCGAAGATACTGGAATTGGAATCCCTTTATGTGCCCAAGATAGAGTTTTCACACCCTTCATGCAAGCAGACAGCTCTACTTCCAGAAACTATGGAGGAACAGGGATCGGGTTAAGTATTAGCAAGTGTCTGGTTGAGCTGATGGGTGGTCAGATAAACTTCATAAGCCAACCCCACGTTGGGAGCACATTCTCTTTCACTGCTATTTTCGGGAGGTGCAAGAAAGCTGCTATTAGTGATGTGAAGAAGAAACCCAACTATGAAGACCTCCCTTCTAGTTTTAGAGGACTTAAAGCTATAGTGGTTGATGGAAAATCGGTTAGAGCTTCTGTTACTAAATATCATTTGAAGAGACTTGGTATCATTGTTGAAATTGCAAGAAACATTAAGGCGGCCACAACTCTATGTGGGAAAAATGGTTCTACCACATCACGGAACATATTTCAACCGGATCTAATTCTAGTCGAGAAGGATACTTGGATTGGGGTGGAAGATGGTGGTCTAAGCATCTGGAAGCTAGACTGGAGACAGAATGGCAACAGCATGTTCAAGTTACCTAGGATGATCCTTCTAGCAACCAATATCAGCCCTTCCGAGTTTGATAAAGCCAAGGCGGCTGGTTTTGAAGACATGGTGATAATGAAGCCGTTGAGAGCAAGTATGGTGGCTGCTTGTCTTCAACAAGTGCTAGGGACTGGTAAGAAGAGCCAACAGGGAAATGGCTCGACTTTCCTTCAGAGCCTTCTCTGTGGCAAGAAGATTTTGGTGGTTGATGACAATATGGTTAACCGGAGAGTTGCAGCCGGGGCCCTCAAGAAATTCGGTGCTGATGTCGAGTGTGCTGATAGCGGGAAAGCTGCTCTGGCTTTGCTTCAATTGCCCCATGTTTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCGACACGGAGAATTCGGCAAATGGAAAGCAAGGAAAACGAGCAAAAGAATGGAATGGAAGGAAATGGTCGGAAGGGCGAGTGGCATTTGCCGATACTAGCAATGACAGCCGACGTTATTCATGCGACATATGATGAGTGCCTCAAATGTGGAATGGATGGATATGTTTCGAAGCCCTTTGAGGAAGAAAATCTTTATCAGGCTGTTGCCAAGTTCTTCAAATCATAG 3012 43.23 MGMKMQQHSHGHHSVSVRLNEQIGTKKGYTFIQSNRAWLPKFLFLWVMVVAFISISIYNGMDADTKVRRKEVLSSMCDQRARMLQDQFNVSVNHVHALAILVSTFHYLKDPSAIDQGTFAEYTARTAFERPLLSGVAYAQRVLNSERESFENKHGWTIKTMERDPSPVRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRASATGKAVLTSPFRLLGSHHLGVVLTFPVYKYKLSPNPPVEERTRATAGYIGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDPLIMYGHQNQEGDLSLLHESKLDFGDPFRKHQMICRYHQKAPTSWPALTMAFLFFVIGLLLGYILYGAATHIVEVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYGQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSIVDDVLSLFSEKSRNKSIELAVFVSDKVPAIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKIHVAEHPKAFTESKSEPCMNGRLNDAPFISTECKFKTLSGFEAADDQNSWDSFEHLTMGGDDSFQSDNSSSSSSTTMNVFNECSEQVTLMVSVEDTGIGIPLCAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISQPHVGSTFSFTAIFGRCKKAAISDVKKKPNYEDLPSSFRGLKAIVVDGKSVRASVTKYHLKRLGIIVEIARNIKAATTLCGKNGSTTSRNIFQPDLILVEKDTWIGVEDGGLSIWKLDWRQNGNSMFKLPRMILLATNISPSEFDKAKAAGFEDMVIMKPLRASMVAACLQQVLGTGKKSQQGNGSTFLQSLLCGKKILVVDDNMVNRRVAAGALKKFGADVECADSGKAALALLQLPHVFDACFMDIQMPEMDGFEATRRIRQMESKENEQKNGMEGNGRKGEWHLPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKS 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1690632 1695891 + Conep09aG0038400.1 Cone9ag0376 444539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0376 1003 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Cone9ag0376 1003 Gene3D - 447 687 IPR036890 -
Cone9ag0376 1003 Coils Coil 433 453 - -
Cone9ag0376 1003 SMART REC_2 867 997 IPR001789 GO:0000160(InterPro)
Cone9ag0376 1003 Pfam Response regulator receiver domain 869 997 IPR001789 GO:0000160(InterPro)
Cone9ag0376 1003 Gene3D - 356 446 - -
Cone9ag0376 1003 PRINTS Bacterial sensor protein C-terminal signature 630 640 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone9ag0376 1003 PRINTS Bacterial sensor protein C-terminal signature 647 665 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone9ag0376 1003 PRINTS Bacterial sensor protein C-terminal signature 671 684 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone9ag0376 1003 PRINTS Bacterial sensor protein C-terminal signature 612 626 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone9ag0376 1003 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone9ag0376 1003 SUPERFAMILY CheY-like 709 846 IPR011006 -
Cone9ag0376 1003 ProSiteProfiles Response regulatory domain profile. 713 845 IPR001789 GO:0000160(InterPro)
Cone9ag0376 1003 SMART CHASE_2 110 295 IPR006189 -
Cone9ag0376 1003 Gene3D - 61 113 - -
Cone9ag0376 1003 Gene3D CHASE domain 114 329 IPR042240 -
Cone9ag0376 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 609 682 IPR003594 -
Cone9ag0376 1003 ProSiteProfiles Response regulatory domain profile. 868 1001 IPR001789 GO:0000160(InterPro)
Cone9ag0376 1003 CDD HisKA 383 444 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone9ag0376 1003 FunFam Histidine kinase 4 114 329 - -
Cone9ag0376 1003 FunFam Histidine kinase 4 355 446 - -
Cone9ag0376 1003 SUPERFAMILY CheY-like 866 1001 IPR011006 -
Cone9ag0376 1003 SMART HisKA_10 383 448 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone9ag0376 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone9ag0376 1003 ProSiteProfiles Histidine kinase domain profile. 390 687 IPR005467 -
Cone9ag0376 1003 Gene3D - 707 849 - -
Cone9ag0376 1003 Gene3D - 862 1003 - -
Cone9ag0376 1003 CDD HATPase_EvgS-ArcB-TorS-like 500 685 - -
Cone9ag0376 1003 CDD REC_hyHK_CKI1_RcsC-like 869 997 - -
Cone9ag0376 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 682 IPR036890 -
Cone9ag0376 1003 Pfam CHASE domain 113 293 IPR006189 -
Cone9ag0376 1003 PANTHER TWO-COMPONENT HISTIDINE KINASE 32 1001 IPR050956 -
Cone9ag0376 1003 SMART HKATPase_4 495 687 IPR003594 -
Cone9ag0376 1003 FunFam Histidine kinase 3 862 1003 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0821 Cone-Chr12:7476353 Cone9ag0376 Cone-Chr9:1690632 2.23E-44 dispersed
Cone4ag1716 Cone-Chr4:12713507 Cone9ag0376 Cone-Chr9:1690632 5.34E-53 dispersed
Cone7ag1634 Cone-Chr7:11050862 Cone9ag0376 Cone-Chr9:1690632 2.29E-53 dispersed
Cone8ag0858 Cone-Chr8:8501919 Cone9ag0376 Cone-Chr9:1690632 1.19E-43 dispersed
Cone8ag1386 Cone-Chr8:10973791 Cone9ag0376 Cone-Chr9:1690632 0 dispersed
Cone6ag0342 Cone-Chr6:1622438 Cone9ag0376 Cone-Chr9:1690632 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46785 PF00201 UDPGT 4.40E-33 CL0113 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0376 K14489 - vvi:100254304 1538.09