Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0381 ATGAAGATCAGTTCGAAGAGAGCGAAACCAGAACTTTTCGAATCGCAGCCGTACATTAAGAAGAAGCTCCGCTCCGACATTGCTCGCCGGAGACGAACTCAGATCTCACCAGTTCTGCCTTCCTCCAATTTGAAGAGTTTCGGTAAGAATTCCGATTTTTCTAGCTTTTCTGTGGATTCTAGCCCGTGCTCGTGCTTCGGAGTTGAAGTTTCGTGTGATTTGAGTGGAGTTAATGGTGGATCGGAGAGGAAAGCGAAGAAGAGACAGTTCAGTGAGATTGACGGCTCTAGAAATCTAATCGATCGAAATGAGAAGTTCTCAGACCAACCGTTACGTAGAATCACGCGGTCTTATTATAGACAAATGGAAAGCGAACGGAAAGAGGAGAGAAAAGAGGTTGGCGTCAGTGAAGCTGAAGCGTCTGAATCGTCGTACGTAGAGTCGAACTCTAGTGTTGGAGTTGAATTTCATGGAAAGAGAAGTTCCAAGCTCAAGAGTAAAACTGTTATTGCCAAAGAGATTGGAGAAAATGAAGGTTCTAAAGCAGTTTCACGATCAGAAATTTCCTGCGTCGACAATGACTCCAGTGCTGGATGTGACAATGAATCCGCGAAGGTTAAGGCAGAGGAAGTCGTCTCAGTCACTTCCGGCGTTGAATGCAGCTCTAAAGCCAAGCCTAAGAGCATCGGTTCATTAACAGAGAATGAAGTCGAGGTCTCTGAAAACAGAGCACTGGAATTTGTATTACAGAATAATCGGAGAAACGACATTGATGCCGGTTTCAGCGTTTCAAACTCTGATTCGATTACAGAGCAGTGGCCAAAGTGTTTCGTATTTGACTCCAATCTCGCTTGCACGGAAAAATTCTCTTATGAGGACATTTCAGAATACTCGTCCAGCCAAGCATTTTCTGAGCTCCAGTCGGAGATTTACCAGGATAATTCGGATCCAGAATTCTCCGATTCGACTTTATCTGTTTTCCTCGATTCTGGAAGCGAATTTTCAGAACGATCCTTAGGAGATTCAACTCCTTCACCTACTTTCTCCCTGTTAATTCAGTACAGAGAGGAATTTTCCAGATCAACCACCTCGCTAGACGCCAGAGTTTCGCACCTTGAGGAAGAGTATAAAGATCATTCTTCGTTTTTGAAGTTTGAAAACAAGGAGGACGAAGAGAGCTACCGAATGCTCAGAAAAAGAGAAGGACAGCACATCGTTTTGGATTGCGGTGATCACATCCTCCAGGAACGGTCACAGATGGTCCATTGGATCGTTGAGCAATCTACTGACTTGGAGCTTCACCAGGAGACTATGTTTCTAGGAGTTGCCATCCTCGACAAGTTCCTAAGCGAAGGATTCTTCAAAAACAGAAGGTTCTTTCAAATTCTTGGAATTGCATGCCTTATATTGGCCACTAGGCTAGAAGAAAATCAACCCTATAACAGTGTGCGGCGAAATAATTTCTTTGTAGATAGCAACATTTACAACAGAAGAGAAGTTATTGCCATGGAATGGCTAGTTGAAGAGGTCCTCAAATTCCGCTGTTTCCTACCAACTGTTTACAACTTCTTATGGTTCTACCTGAAAGCTGCTAGAGCTGATTCGTCCGTGGAGAAGAGGGCCAACTACCTGTCAATTTTAGTGTTATCAGACCGTGTCTTGATGCGTTATCGGCCCTCAACCATTGCTGCTGCATTGGTCATTCTAGCTTCTCTGGAAGGCAACCAAGATGCATCCCATCAACGAGTGATGGAGACACATGTCAGGACAATGTCAGATGATTTGCCTGAATGCATAGAGAGTCTAGAGTGGTTGCTAAGGTATGTATGA 1830 44.15 MKISSKRAKPELFESQPYIKKKLRSDIARRRRTQISPVLPSSNLKSFGKNSDFSSFSVDSSPCSCFGVEVSCDLSGVNGGSERKAKKRQFSEIDGSRNLIDRNEKFSDQPLRRITRSYYRQMESERKEERKEVGVSEAEASESSYVESNSSVGVEFHGKRSSKLKSKTVIAKEIGENEGSKAVSRSEISCVDNDSSAGCDNESAKVKAEEVVSVTSGVECSSKAKPKSIGSLTENEVEVSENRALEFVLQNNRRNDIDAGFSVSNSDSITEQWPKCFVFDSNLACTEKFSYEDISEYSSSQAFSELQSEIYQDNSDPEFSDSTLSVFLDSGSEFSERSLGDSTPSPTFSLLIQYREEFSRSTTSLDARVSHLEEEYKDHSSFLKFENKEDEESYRMLRKREGQHIVLDCGDHILQERSQMVHWIVEQSTDLELHQETMFLGVAILDKFLSEGFFKNRRFFQILGIACLILATRLEENQPYNSVRRNNFFVDSNIYNRREVIAMEWLVEEVLKFRCFLPTVYNFLWFYLKAARADSSVEKRANYLSILVLSDRVLMRYRPSTIAAALVILASLEGNQDASHQRVMETHVRTMSDDLPECIESLEWLLRYV 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1732722 1735848 - Conep09aG0038900.1 Cone9ag0381 444544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0381 609 Pfam Cyclin, N-terminal domain 414 514 IPR006671 -
Cone9ag0381 609 Pfam Cyclin, C-terminal domain 518 604 IPR004367 -
Cone9ag0381 609 MobiDBLite consensus disorder prediction 122 137 - -
Cone9ag0381 609 Coils Coil 119 139 - -
Cone9ag0381 609 SUPERFAMILY Cyclin-like 518 606 IPR036915 -
Cone9ag0381 609 SUPERFAMILY Cyclin-like 390 514 IPR036915 -
Cone9ag0381 609 MobiDBLite consensus disorder prediction 122 144 - -
Cone9ag0381 609 ProSitePatterns Cyclins signature. 417 448 IPR048258 -
Cone9ag0381 609 PANTHER CYCLINS 378 600 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone9ag0381 609 Gene3D - 513 609 - -
Cone9ag0381 609 Gene3D - 411 512 - -
Cone9ag0381 609 SMART cyclin_7 422 509 IPR013763 -
Cone9ag0381 609 SMART cyclin_7 522 607 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0381 K21777 - - mdm:103452230 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0381 Cone-Chr9:1732722 Cone4ag1308 Cone-Chr4:10767744 3.13E-07 dispersed
Cone6ag0348 Cone-Chr6:1692728 Cone9ag0381 Cone-Chr9:1732722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35