Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0385 ATGTCGTCAAGGTCGTATTCTAATCTATTGGAGCTTGCTTCTGGGGAATCTCCATCGTTTGGCCGAATGAGCAGGCAAATCCCTCGAATCATGACAGTGGCCGGATTAATATCCGATATAGATGATGACCGATCGGAAGGCTTTTGCTCTGACCACTCTTCCTCTGTTCAGAGGGACAGAATCATAATAGTGGCCAATGAGCTCCCCATACGGGCTCAGAGAAAACCCGAAACGAGAGATTGGAGCTTTAGCTTGGATGAGAACTCTCTTCCCCTCCAGCTAAAAGATGGCATAGGAGATGATGACGTGGATGTAGTGTATGTGGGTTGTCTTAAGGCAGAAGTTCACCCTAGTGAGCAAGATGAGGTTTCAAAAATCCTCTTACAGTCCTTTAGATGTGTCCCTACATTTCTCCCACCTGAGCTTTATAGCAGGTACTACCACGGCTTCTGCAAGCAACAGCTTTGGCCTCTGTTCCACTACATGTTGCCTTTATCACCTGACCTTGGCGGTAGGTTTAATCGGTCTCTATGGCAAGCTTATGTATCAGTCAACAAGATTTTTGCAGATCGAATCATGGAAGTCATTAACCCAGAAGATGACTTTGTTTGGATACATGATTATCATCTCATGGTTTTACCCACCTTCTTGAGGAAAAGATTCAATCGGGTCAAGCTCGGGTTTTTCCTTCATAGCCCGTTCCCTTCGTCTGAAATTTATAAGACCCTGCCTATTAGGGAAGAGCTTCTACGTGCCCTTTTGAATTCGGATTTGATCGGGTTTCATACATTCGACTATGCCCGACATTTCTTATCATGCTGTAGTAGAATGCTTGGCTTGACATATGAATCAAAACGGGGTTATATAGGCATAGAGTATTATGGTCGAACTGTAAGCATCAAAATCCTACCAGTAGGTATCCATATGGGTCAGCTTGAGTCTGTTTTGAGCCTTGCAGAAACCAAAACAAAAGTTTCCGAGCTGGTCAAACAGTTTTCTGACAAAGGAAGGATAATGTTACTAGGAGTAGACGATATGGACATCTTCAAGGGGATAAGTCTAAAGCTTTTAGCCATGGAGCAGCTTCTTCAACAAAACCCAAAATTCCAAGGAAAAGTCGTCTTGGTACAAATTGCGAATCCGGCTAGAGGCAGGGGTAAAGACGTAAAAGAAGTCCAAGATGAGACAAATTCAACAGTCAAACGGATAAATGATACATTCGGAACACCCGGATATGACCCTGTTGTCTTAATTGAACAACCACTTCAATTTTACGAGAGAATTGCTTACTACGTTGTTGCAGAGTGTTGTCTTGTCACTGCTGTAAGAGATGGAATGAATTTGATTCCATATGAGTATATAATTTCTAGACATGGAAACGAGATGCTGGATGAGGTTTTAGGGCTCGACTATAATTCAAAGAAGAGCATGTTAGTTGTGTCCGAGTTTATAGGCTGCTCCCCGTCTTTAAGTGGAGCCATCCGCGTCAACCCATGGAACATTGAGGCCGTATCAGATGCAATGTACTCTGCTTTAGAGATGCCTTCTTCAGAAAAACAACTCAGGCATGAGAAACATTATAGATATGTAAGCACACATGATGTTGGGTACTGGGCCCGTAGTTTCTTACAAGATTTGGAGCGGACTTGTAAGGACCACGTAAGGAGGAGGTGTTGGGGAATTGGGTTCGGTTTGGGTTTTAGAGTTGTAGCGCTGGATCCAAACTTTAGGAAGCTTTCAATGGAGCATATTGTTTCTGCATATAAGAGGACAAGTACAAGGGCAATCCTTTTGGACTATGATGGGACTCTTATCCCTCCAGGCTCAATTGATAAGAGCCCTAGTTCGAGATGTATTGAGATCCTTAACAGCCTCTGTCAGGATAAGAACAATGTGGTTTTTATTGTTAGTGCGAGAAGCCGTAAAACATTATCTGAATGGTTCTCTCCTTGTGAGAAGCTCGGGATTGCTGCAGAGCATGGCTACTTTCTAAGGTTGAAAAGAGATGCAGAATGGGAAACGTGCGTGGGCCCCACAGACTGTAGCTGGAAGCAGATTGCAGAGCCAGTTATGAAACTATACACGGAAACGACTGATGGGTCCACCATTGAAGATAAGGAAACAGGGGTCGTGTGGTGTTATGAAGATGCTGATCGGGATTTTGGCTCGTGTCAAGCGAAGGAGCTTCATGACCATCTTGAAAGTGTGCTTGCTAATGAACCTGTTACTGTCAAGCGTGGTTGGAATATTGTAGAAGTTGTGCCACAGGGTGTAAGTAAGGGGCTTGTGGCAAAAAGGCTACTTTCAATTATGGAAGAGCGAGGTATGTCTCCAGATTATGTTCTGTGCATAGGGGATGATAGATCGGACGAGGACATGTTTGAGGTGATTAATAGTGCAATGGCGGGGGAAACGTCCAGTCTTCCTACAGCGGAAGTTTTTGCATGTACTGTTGGGAAAAAGCCAAGTAAGGCGAAGTATTATTTAGATGATGTTGCGGAGATTTTCCGGTTGATACAGGGATTGGCCTCTGTTTCGGAACAGGTAGTTTCTTCTCGAGGATGA 2565 43.94 MSSRSYSNLLELASGESPSFGRMSRQIPRIMTVAGLISDIDDDRSEGFCSDHSSSVQRDRIIIVANELPIRAQRKPETRDWSFSLDENSLPLQLKDGIGDDDVDVVYVGCLKAEVHPSEQDEVSKILLQSFRCVPTFLPPELYSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLESVLSLAETKTKVSELVKQFSDKGRIMLLGVDDMDIFKGISLKLLAMEQLLQQNPKFQGKVVLVQIANPARGRGKDVKEVQDETNSTVKRINDTFGTPGYDPVVLIEQPLQFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRHGNEMLDEVLGLDYNSKKSMLVVSEFIGCSPSLSGAIRVNPWNIEAVSDAMYSALEMPSSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCKDHVRRRCWGIGFGLGFRVVALDPNFRKLSMEHIVSAYKRTSTRAILLDYDGTLIPPGSIDKSPSSRCIEILNSLCQDKNNVVFIVSARSRKTLSEWFSPCEKLGIAAEHGYFLRLKRDAEWETCVGPTDCSWKQIAEPVMKLYTETTDGSTIEDKETGVVWCYEDADRDFGSCQAKELHDHLESVLANEPVTVKRGWNIVEVVPQGVSKGLVAKRLLSIMEERGMSPDYVLCIGDDRSDEDMFEVINSAMAGETSSLPTAEVFACTVGKKPSKAKYYLDDVAEIFRLIQGLASVSEQVVSSRG 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1756657 1760212 + Conep09aG0039500.1 Cone9ag0385 444548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0385 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cone9ag0385 854 Pfam Glycosyltransferase family 20 60 547 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone9ag0385 854 Gene3D - 593 728 IPR023214 -
Cone9ag0385 854 Gene3D - 729 853 IPR023214 -
Cone9ag0385 854 FunFam Alpha,alpha-trehalose-phosphate synthase 315 531 - -
Cone9ag0385 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 551 - -
Cone9ag0385 854 Pfam Trehalose-phosphatase 597 832 IPR003337 GO:0005992(InterPro)
Cone9ag0385 854 CDD HAD_TPP 595 832 - -
Cone9ag0385 854 FunFam Trehalose-6-phosphate synthase 10 724 853 - -
Cone9ag0385 854 Gene3D Glycogen Phosphorylase B; 51 313 - -
Cone9ag0385 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 845 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone9ag0385 854 NCBIfam HAD-IIB family hydrolase 596 800 IPR006379 -
Cone9ag0385 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 313 - -
Cone9ag0385 854 CDD GT20_TPS 60 547 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone9ag0385 854 SUPERFAMILY HAD-like 594 842 IPR036412 -
Cone9ag0385 854 Gene3D Glycogen Phosphorylase B; 314 531 - -
Cone9ag0385 854 NCBIfam trehalose-phosphatase 594 842 IPR003337 GO:0005992(InterPro)
Cone9ag0385 854 FunFam Trehalose-6-phosphate synthase 2 678 756 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1019 Cone-Chr19:7611801 Cone9ag0385 Cone-Chr9:1756657 0 dispersed
Cone9ag0238 Cone-Chr9:1015255 Cone9ag0385 Cone-Chr9:1756657 2.09E-133 dispersed
Cone8ag0594 Cone-Chr8:5022593 Cone9ag0385 Cone-Chr9:1756657 0 transposed
Cone6ag0352 Cone-Chr6:1717486 Cone9ag0385 Cone-Chr9:1756657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0385 K16055 - vvi:100252552 1453.34