Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0387 ATGGCGAGTCTCGCTCATCACCAGACCAACCTCTTCCTCTCCCCGCGCACTAACTTCCGCTCCAAAACCAGATCCATTCCCGGCGTTGTCCGGATGGCTTTCCGGGAAGACGCGCCGTCTATTGCGGTGGTCGGGGTCACCGGGGCCGTCGGCCAGGAATTTCTCTCTGTCCTCTCTGACCGTGATTTCCCCTACCGCTCCATCAAAATGCTCGCTTCCAAGCGCTCGTCTGGAAAATCTCTCACCTTCCAAGACAAAAATTATGTCATCGAGGAGCTCACTGCGGAGAGCTTTGACGGTGTTGACATTGCTCTCTTTAGCGCAGGAGGTTCTATAAGCAAGCAGTTTGGGCCTATAGCTGTTGATAAGGGGACTATAGTGGTGGATAATAGCTCGGCTTTTCGAATGGATGAGAATGTGCCGCTTGTTATCCCTGAGGTTAATCCGGAAGCCATGGCTGGGATTAAGGTTGGGTCTGATAAGGGCGCTTTGATTGCTAACCCTAATTGCTCTACTATTATCTGCTTGATGGCCGTCACTCCTCTTCATCGCCACGCTAAGGTGGTACGCATGGTTGTTAGCACTTATCAGGCAGCAAGTGGTGCTGGTGCTGCGGCAATGGAAGAGCTTTTGCAGCAAACTCGTGAGGTCCTGGATGGAAAGGAGGCAACCTGTAATATATTTAATGATCAGTATGCTTTCAATTTGTTTTCCCACAATGCACCTGTACTTCCAAATGGATACAACGAAGAGGAAATGAAATTGGTGAAAGAGACTAGAAAAATTTGGAATGACAAGAATGTTAAAGTTACAGCCACATGCATAAGGGTACCTGTCATGCGTGCACATGCTGAAAGTGTGAATCTTCAATTTGAGAATCCCCTTGACGAGGATTCAGCCAGGGAAATTCTGAGAAATGCCCCTGGAATTGTGATTATTGACGACCGAGCATCAAATCAGTTCCCCACCCCATTGAAAGTATCTAACAAAGATGACATTGCAGTTGGCAGGATTCGCCATGATGTATCACAAAATGGGGCCCATGGGCTGGACATCTTTGTCTGTGGGGATCAAATTCGGAAAGGAGCTGCTCTTAATGCTGTTCAAATTGCTGAAATGCTGTTATAA 1128 47.87 MASLAHHQTNLFLSPRTNFRSKTRSIPGVVRMAFREDAPSIAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSSGKSLTFQDKNYVIEELTAESFDGVDIALFSAGGSISKQFGPIAVDKGTIVVDNSSAFRMDENVPLVIPEVNPEAMAGIKVGSDKGALIANPNCSTIICLMAVTPLHRHAKVVRMVVSTYQAASGAGAAAMEELLQQTREVLDGKEATCNIFNDQYAFNLFSHNAPVLPNGYNEEEMKLVKETRKIWNDKNVKVTATCIRVPVMRAHAESVNLQFENPLDEDSAREILRNAPGIVIIDDRASNQFPTPLKVSNKDDIAVGRIRHDVSQNGAHGLDIFVCGDQIRKGAALNAVQIAEMLL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1769218 1771843 - Conep09aG0039700.1 Cone9ag0387 444550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0387 375 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 169 362 - -
Cone9ag0387 375 SMART Semialdhyde_dh_3 40 155 IPR000534 GO:0016620(InterPro)|GO:0051287(InterPro)
Cone9ag0387 375 PIRSF ASA_dh 38 375 - -
Cone9ag0387 375 NCBIfam aspartate-semialdehyde dehydrogenase 40 374 IPR005986 GO:0004073(InterPro)|GO:0009086(InterPro)|GO:0009088(InterPro)|GO:0009089(InterPro)|GO:0009097(InterPro)|GO:0050661(InterPro)
Cone9ag0387 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 197 IPR036291 -
Cone9ag0387 375 Pfam Semialdehyde dehydrogenase, NAD binding domain 41 153 IPR000534 GO:0016620(InterPro)|GO:0051287(InterPro)
Cone9ag0387 375 Gene3D - 41 374 - -
Cone9ag0387 375 Hamap Aspartate-semialdehyde dehydrogenase [asd]. 38 375 IPR012080 GO:0004073(InterPro)|GO:0009086(InterPro)|GO:0009088(InterPro)|GO:0009089(InterPro)|GO:0009097(InterPro)|GO:0050661(InterPro)
Cone9ag0387 375 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 39 375 - -
Cone9ag0387 375 Pfam Semialdehyde dehydrogenase, dimerisation domain 180 361 IPR012280 GO:0008652(InterPro)|GO:0016620(InterPro)|GO:0046983(InterPro)
Cone9ag0387 375 Coils Coil 204 224 - -
Cone9ag0387 375 Gene3D Dihydrodipicolinate Reductase; domain 2 170 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0387 K00133 - - vvi:100245641 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0356 Cone-Chr6:1741620 Cone9ag0387 Cone-Chr9:1769218 6.17E-259 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g506 . . . . . Bpe10g01005 . Bma15g00024 Cmo04g01106 . Cma04g01035 . Car04g00966 Car04g00081 Sed04g2992 . . Bhi07g00410 Tan04g1488 Cmetu10g1235 Lac13g1310 Hepe01g0605 . . Cla07g00525 Cam07g0564 Cec07g0614 Cco07g0589 Clacu07g0565 Cmu07g0602 Cre07g0934 . . Cone6ag0356 Cone9ag0387 Lsi04g00990 . . . Blo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005424 1 1 1 1 2 1 2 1 1 0 1 1 2 0 1 2 1 2 2 1 1 2 1 1 1 1 1 3 1 1 37