Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0388 ATGGGGATGGCTAGGATGGAAGAAGAAGGTGAGGTCAGGTGCACTGGGAAGAGGCTGAAATGCTCAAGGAAACATGAAGATAAGGAAGAAGAAGAAGAAGCTGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGACGAACGGGAGCTTCCGATTAAGCCAGGACTTTCCTACTTTCCGATCGCCCCTACTTCCTTTGTCGTCTCCGATGCTTTGGAGCCTGATTTTCCGATCATTTATGTAAATAAAGTCTTCGAGATCTTCACTGGTTATCGTGCCGATGAGGTCCTTGGTCGAAACTGTCGGTTCTTACAATACAGGGACCCTCATGCACAAAGGAGGCACCCTTTGGTAGATCCCGTTGTTGTTTCCGAGATAAGAAGGTGTCTTGAGGAAGGTATTGAATTCCAAGGTGAGCTCCTCAATTTCAGGAAAGACGGTACTCCCTTGGTGAACAGGCTAAGACTTGCACCCATACATGATGATGATGGAACAATGACACACATAATAGGCATTCAAGTGTTTACTGAAACAAAAATCGATCTGAATAGGGTATCATACCCTGTTTTCAAAGAGAATTGCAATCAACAATATGACCAGTCCGGAAAATACATCTTGTACGGACAGTCACCATTTGGCCAACGTGAAGAAACGTGTGGAATACTTCAACTTTCCGATGAAGTCCTGGCCCAAAACATTTTATCACGATTAACACCAAGGGACGTTGCATCTGTTGGATCTGTCTGCAGAAGAATCCGTCAATTGACAAAGAATGAACATCTAAGGAAAATGGTTTGTCAAAATGCATGGGGAAGGGAAGTCATAGGTACATTAGAGCTAATGACTAAGAAGTTAGGGTGGGGGCGTTTGGCTAGAGAGCTAACGACTCTTGAAGCCATTTGTTGGAGGAAACTGACTGTAGGAGGTGCTGTGGAGCCTTCCCGTTGCAATTTCAGTGCATGTGCTGTGGGGAATAGACTTGTATTATTTGGAGGAGAAGGGGTAAATATGCAGCCTATGGACGATACTTTTGTCCTCAATCTTGATGCTGCAAATCCCGAGTGGCGTAGAGTCAGCGTTAAATCGTCCCCACCTGGGCGGTGGGGCCATACCCTCTCATGCCTAAATGGTTCCTGGTTAGTGGTTTTTGGGGGATGTGGGAGAAAAGGGTTACTCAACGATGTGTTTGTTCTAGACTTAGATGCTAAACAGCCAACATGGAAAGAAGTCTCGGGGGGGACCCCCCCCCTTCCGAGATCTTGGCACAGCTCTTGCACAATAGATGGTTCTAAATTGGTAGTCTCGGGTGGATGTACAGATGCCGGAGTACTTCTCAGCGATACATACTTATTAGATCTAACAACAGAGGAACCAATCTGGAAAGAGATTCCCACCTCATGGACTCCCCCTTCAAGATTAGGACATTCTCTTTCAGTTTATGGTCAGAAAAAGATTCTTATGTTTGGTGGGCTTGCAAAAAGCGGGCACTTGCAGCTAAGATCAGGAGAAGCATACACCATTGATTTGGAAGAGGAGGAGTCTCAATGGAGGCAGATTGAATGTGATGTAGGGAGCCAAAATGCAGTGGTCCCTCCTCCTAGACTTGATCATGTTGCCGTTACAATGCCTTGTGGGAGGATAATCATCTTTGGAGGTTCAATTGCTGGCTTGCACTCTCCTTCTCAGCTCTTCCTTTTGGATCCCTCTGAGGAGAAGCCGTCTTGGAGAATACTTAATGTTCCGGGTCAACCTCCGAAATTTGCATGGGGTCATAGCACTTGTGTGGTTGGCGGGACAAGACTTCTTGTGTTAGGTGGGCATACGGGGGAGGAATGGATTCTTAACGAATTGCACGAGCTACGCTTAGCAAGTTGGCAAGAGTCTGAACTCTGA 1899 46.02 MGMARMEEEGEVRCTGKRLKCSRKHEDKEEEEEADDEEEEEEEEEEEDERELPIKPGLSYFPIAPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTMTHIIGIQVFTETKIDLNRVSYPVFKENCNQQYDQSGKYILYGQSPFGQREETCGILQLSDEVLAQNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVIGTLELMTKKLGWGRLARELTTLEAICWRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRKGLLNDVFVLDLDAKQPTWKEVSGGTPPLPRSWHSSCTIDGSKLVVSGGCTDAGVLLSDTYLLDLTTEEPIWKEIPTSWTPPSRLGHSLSVYGQKKILMFGGLAKSGHLQLRSGEAYTIDLEEEESQWRQIECDVGSQNAVVPPPRLDHVAVTMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRLLVLGGHTGEEWILNELHELRLASWQESEL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1773687 1776873 + Conep09aG0039800.1 Cone9ag0388 444551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0388 632 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 64 627 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Cone9ag0388 632 Gene3D - 214 310 - -
Cone9ag0388 632 Pfam Galactose oxidase, central domain 431 482 - -
Cone9ag0388 632 Pfam Galactose oxidase, central domain 382 429 - -
Cone9ag0388 632 Pfam Kelch motif 537 584 IPR011498 GO:0005515(InterPro)
Cone9ag0388 632 CDD PAS 64 174 IPR000014 -
Cone9ag0388 632 SMART pac_2 139 180 IPR001610 -
Cone9ag0388 632 Pfam F-box-like 232 269 IPR001810 GO:0005515(InterPro)
Cone9ag0388 632 FunFam Adagio protein 1 58 186 - -
Cone9ag0388 632 MobiDBLite consensus disorder prediction 1 29 - -
Cone9ag0388 632 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 175 IPR035965 -
Cone9ag0388 632 ProSiteProfiles PAS repeat profile. 80 111 IPR000014 -
Cone9ag0388 632 Pfam PAS domain 74 175 IPR000014 -
Cone9ag0388 632 CDD F-box_AtADO-like 222 268 - -
Cone9ag0388 632 MobiDBLite consensus disorder prediction 1 56 - -
Cone9ag0388 632 SUPERFAMILY F-box domain 216 275 IPR036047 GO:0005515(InterPro)
Cone9ag0388 632 SUPERFAMILY Galactose oxidase, central domain 304 617 IPR011043 -
Cone9ag0388 632 Gene3D PAS domain 60 186 - -
Cone9ag0388 632 Coils Coil 22 51 - -
Cone9ag0388 632 FunFam Putative LOV domain-containing protein 500 628 - -
Cone9ag0388 632 FunFam Putative LOV domain-containing protein 294 499 - -
Cone9ag0388 632 Pfam Galactose oxidase, central domain 317 367 - -
Cone9ag0388 632 Gene3D - 500 631 IPR015915 GO:0005515(InterPro)
Cone9ag0388 632 Gene3D - 375 499 IPR015915 GO:0005515(InterPro)
Cone9ag0388 632 MobiDBLite consensus disorder prediction 30 50 - -
Cone9ag0388 632 NCBIfam PAS domain S-box protein 79 174 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0388 K12116 - - csv:101222712 1088.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0299 Cone-Chr16:3419655 Cone9ag0388 Cone-Chr9:1773687 3.05E-298 dispersed
Cone2ag0725 Cone-Chr2:32905264 Cone9ag0388 Cone-Chr9:1773687 6.76E-300 dispersed
Cone9ag0388 Cone-Chr9:1773687 Cone12ag1283 Cone-Chr12:9795258 8.80E-14 dispersed
Cone6ag0358 Cone-Chr6:1746655 Cone9ag0388 Cone-Chr9:1773687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34