Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0389 ATGGCTACGATGGAGAGCCTGATCGGTCTCGTCAATCGAATCCAGCAAGCCTGTACCGTCTTAGGAGACCATGGCGGTGGTGATGGAATGTCGCTCTGGGAAGCGCTTCCTTCTGTTGCTGTTGTCGGTGGACAGAGCTCGGGGAAATCTTCGGTTCTTGAAAGCGTGGTGGGGAGGGATTTTCTTCCTCGTGGATCTGGTATTGTTACGCGAAGACCATTAGTGTTGCAACTTCATAAGATAGAAAGGGGAACTGAATATGCAGAGTTTCTTCATGCTCCGAAGAAAAAGTTCACTGATTTTGCTTCTGTGCGGAAAGAAATCGCAGATGAGACGGATCGTATAACTGGGAAGTCAAAGCAAATCTCAAATGTTCCAATTCATTTGAGCATATATTCTCCCAATGTTGTCAATTTAACCCTCATAGACCTTCCTGGATTGACAAAAGTTGCTGTAGAGGGACAGCCAGACAGTATTGTTGAGGATATTGAAAACATGGTTCGTTCTTATGTTGAGAAGCCTAACTGCATTATCCTGGCAATTTCTCCTGCTAATCAAGATATTGCCACTTCAGATGCTATAAAGCTTGCAAAAGAGGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGCTTACAAAACTTGATCTGATGGACAAGGGAACTAATGCTCGAGATGTTCTTGAAGGAAGGTCATACCGGCTGCAACATCCATGGGTTGGGGTTGTAAATCGTTCTCAAGCTGACATCAATAAGAACGTTGACATGATCTATGCTCGTAAGAAGGAGAATGAATATTTCGAAACAAGTCCCGAGTATGGACACTTGGCACATAAGATGGGTTCAGAATATCTTGCCAAGCTATTATCTAAGCATTTGGAGACTGTTATTAGGCAACGCATACCAAGTATTATTGCATTGATAAATAAGACAATCGATGAATTGAATGCAGAGTTGGACCGAATTGGCCGGCCAATAGGACTAGACTCGGGGGCCCAGCTGTACACTATTCTAGAAATGTGCCGTGCATTTGACCGTGTATTTAAGGAACACCTGGATGGAGGGCGACCTGGTGGAGATCGGATATATGGAGTTTTCGACCACCAACTACCTGCTGCCCTAAAAAAACTGCCACTTGATCGTCATCTCTCTATAAAAAATGTCCAAAGGGTTGTCACAGAGGCTGATGGGTATCAGCCCCATTTGATTGCTCCAGAACAAGGATACAGAAGACTCATAGAAGGATCAATCGGTTTTTTCAGGGGCCCTGCTGAAGCCTCTGTGGATGCTGTGCACTTTATTTTGAAAGAACTTGTACGGAAGTCAATAGCTGAAACAGAGGAACTGAGGAGATTTCCAACACTGCAATCTGACATAGCAGCTGCTGCAACAGAAGCATTGGAAAGATTCCGTGAAGAAAGCCGCAGGACAGTTACACGGTTGGTGGAAATGGAATCTGGCTATCTGACAGTAGAATTTTTTCGGAAGCTGCATTCGGAATCAGAGCGGAATGAAAAAGATGAGAAAAATCCTAGTGCAAAAGGCTCTAATTCAAGGGGCCCAAATGTGACACTCCCGAGAGACCTCCCCACCGATTATCATCTCAGGAGAATTGCAACTAATGTGAGCAACTACATTATGATGGTTTGTGATATGCTGAAGAATACCATTCCCAAGGCTGTGGTTTACTGTCAAGTTCGTGAGGCGAAGAGATCATTGCTCAACCACTTTTATGTTCAAGTGGGGAAAAGAGAGAAAGAACAGCTTGGATCAATGTTGGATGAAGACAAATCTTTAACAGAAAAGAGAATAGGCATCGCTAAAAGACTTGAACTATACAAATCAGCAAGAGAAGCCATTGACTCCGTGGCATGGAAATGA 1878 43.82 MATMESLIGLVNRIQQACTVLGDHGGGDGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKIERGTEYAEFLHAPKKKFTDFASVRKEIADETDRITGKSKQISNVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAKEVDPSGERTFGVLTKLDLMDKGTNARDVLEGRSYRLQHPWVGVVNRSQADINKNVDMIYARKKENEYFETSPEYGHLAHKMGSEYLAKLLSKHLETVIRQRIPSIIALINKTIDELNAELDRIGRPIGLDSGAQLYTILEMCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPLDRHLSIKNVQRVVTEADGYQPHLIAPEQGYRRLIEGSIGFFRGPAEASVDAVHFILKELVRKSIAETEELRRFPTLQSDIAAAATEALERFREESRRTVTRLVEMESGYLTVEFFRKLHSESERNEKDEKNPSAKGSNSRGPNVTLPRDLPTDYHLRRIATNVSNYIMMVCDMLKNTIPKAVVYCQVREAKRSLLNHFYVQVGKREKEQLGSMLDEDKSLTEKRIGIAKRLELYKSAREAIDSVAWK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1777428 1784918 - Conep09aG0039900.1 Cone9ag0389 444552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0389 625 FunFam dynamin-related protein 1E 4 310 - -
Cone9ag0389 625 Pfam Dynamin family 39 214 IPR045063 -
Cone9ag0389 625 PANTHER DYNAMIN 5 622 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cone9ag0389 625 ProSiteProfiles GED domain profile. 534 625 IPR020850 -
Cone9ag0389 625 SMART dynamin_3 4 252 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0389 625 Pfam Dynamin GTPase effector domain 531 622 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0389 625 PRINTS Dynamin signature 225 244 IPR022812 -
Cone9ag0389 625 PRINTS Dynamin signature 183 201 IPR022812 -
Cone9ag0389 625 PRINTS Dynamin signature 36 54 IPR022812 -
Cone9ag0389 625 PRINTS Dynamin signature 133 150 IPR022812 -
Cone9ag0389 625 PRINTS Dynamin signature 61 78 IPR022812 -
Cone9ag0389 625 PRINTS Dynamin signature 202 218 IPR022812 -
Cone9ag0389 625 FunFam Dynamin-related protein 1C 332 602 - -
Cone9ag0389 625 Pfam Dynamin central region 222 490 IPR000375 -
Cone9ag0389 625 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 33 301 IPR030381 GO:0005525(InterPro)
Cone9ag0389 625 SMART GED_2 529 622 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0389 625 CDD DLP_1 36 301 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0389 625 MobiDBLite consensus disorder prediction 499 527 - -
Cone9ag0389 625 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 62 71 IPR019762 -
Cone9ag0389 625 Gene3D - 4 310 IPR027417 -
Cone9ag0389 625 Gene3D Dynamin, middle domain 334 602 - -
Cone9ag0389 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 309 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0389 K27686 - - csv:101212826 1051.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0272 Cone-Chr14:1243641 Cone9ag0389 Cone-Chr9:1777428 0 dispersed
Cone7ag0433 Cone-Chr7:1939996 Cone9ag0389 Cone-Chr9:1777428 0 dispersed
Cone8ag0449 Cone-Chr8:2855924 Cone9ag0389 Cone-Chr9:1777428 3.73E-09 dispersed
Cone8ag1031 Cone-Chr8:9540182 Cone9ag0389 Cone-Chr9:1777428 4.80E-94 dispersed
Cone9ag0389 Cone-Chr9:1777428 Cone9ag0859 Cone-Chr9:4193511 1.13E-300 dispersed
Cone6ag0359 Cone-Chr6:1750347 Cone9ag0389 Cone-Chr9:1777428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154