Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0394 ATGGTTACGAATCCTGAAGATTCTCTCATTTGCGCTTCTGTGCTTCGCAACCTTTCAGACAAGCTCTACGAGAAGCGAAAGAATGCTGCTCTGGAGCTTGAGGGAACAGTGAAGCAGCTTGCTGCAGCTGGGGATCATGACAAGATAGTGGCGATTATCAAGTTGTTGGCCACTGAATTCACTAAATCACCACAAGTAAATTATCGGAAGGGAGGGTTGATTGGGTTAGCTGCTGCTACTGTTGCACTGCGTGGGGAAGCGGCTCCGCATCTTGAGCAAATTGTCCAACCAGTTCTTAATTCTCTTTCTGATCAAGATAGCCAGGTTCGCTATCATGCTTGTGAGGCTTTATACAATATTGCCAAGGTTGTTAGAGGGGATTTCATCATATACTTTAATCAGGTTTTTGATGCCTTGTGTAAGCTTTCTGCTGACTCAGCTGCCAATGTACAAAGTGCTGCTCATCTCTTAGATAAGCTTGTAAAGGAAATTGTCACTGAAAGTGATCAATTCAGCATTGAAGAGTTTATCCCATTATTGAAGGATCGGATGAATGTCCTGAATCCCTTTGTGCGCCAGTTTTTGGTAGGCTGGATCACTGTACTTGACAGTGTTCCAGATATTGATATGCTGGGTTTTCTTCCTGATTTTCTTGATGGTCTGTTCAACATGTTAAGTGATTCAAGCTATGAAATAAGGCAACAAGCTGATTCTGCTCTTTCGGAGTTCCTTCAAGAGATCAAGAACTCCCCATCTGTAGATTATGGTCGCATGACTGAGATTCTGGTCCGGAGGGCGGCTTCTGTAGATGACTTTACTCGATTAACTGCTATCACATGGTTGAATGAGTTTCTAAGACTTGGTGGAGACCAACTAGTACCTTACTATGCTGATATATTGAGTGCAATTCTGCCCTGCATATCTGATAAAGAAGAGAAAATTAGAGTGATTTCTCGGCAAACCAATGAAGAGCTTCGCAACATCAATGTTATTCCATCTGAAGTATTTGATGTTGGAACAATCCTCTCAATTGCAAGGAGGCAACTCTCTAGTGAATTTGAGGCCACTCGAATTGAAGCATTGCTCTGGGTGTCAACACTTTTGAACAGACATCGAAACGAGGTCTTATCTTCTCTGAACGATGTGTTTGACACTCTTCTTAAAGCACTTTCTGATCCTTCTGATAAGGTGGTGCTCCTTGCTCTCGAGATTCATGCATGCATAGCAAAAGATCAGCTACATTTCCACCAGCTTGTTGCTTTCCTAGTACATAATTTTCGGATGGATAATTCTCTTTTGGAGAAGCGTGGTGCATTGATAATCCACCGGCTTTGCGTACTTTTAGATGCTAAAAGAGTCTATGAGGAACTCTCTACAATACTAGAGGGAGAATCTGATCTGGATTTTGCTTCTGTTATGGTTCAGGCATTGAATTTGATTTTACTGACTTCCTCTGAATTATCTGAACTTCGAAATCTTTTAAGAAGTTCATTGGTGAATGCGGATGGGAGGGACCTGTTTGTTTCTTTGTATGCTTCATGGTGTCATTCACACATGGCAATCATAAGTCTTTGTTTATTAGCTCAGACATACCAGCATGCAAATGTTGTGATTCAGTCTCTGGTGGAGGAAGATATTAACAGCAAGTTTTTTATTCAGCTGGATAAATTGATTCGCTTGCTTGAAACTCCCATCTTTGCTTCCCTTAGATTGCAGCTTCTTGAACCAGAAAAATATAAATAG 1743 41.37 MVTNPEDSLICASVLRNLSDKLYEKRKNAALELEGTVKQLAAAGDHDKIVAIIKLLATEFTKSPQVNYRKGGLIGLAAATVALRGEAAPHLEQIVQPVLNSLSDQDSQVRYHACEALYNIAKVVRGDFIIYFNQVFDALCKLSADSAANVQSAAHLLDKLVKEIVTESDQFSIEEFIPLLKDRMNVLNPFVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSYEIRQQADSALSEFLQEIKNSPSVDYGRMTEILVRRAASVDDFTRLTAITWLNEFLRLGGDQLVPYYADILSAILPCISDKEEKIRVISRQTNEELRNINVIPSEVFDVGTILSIARRQLSSEFEATRIEALLWVSTLLNRHRNEVLSSLNDVFDTLLKALSDPSDKVVLLALEIHACIAKDQLHFHQLVAFLVHNFRMDNSLLEKRGALIIHRLCVLLDAKRVYEELSTILEGESDLDFASVMVQALNLILLTSSELSELRNLLRSSLVNADGRDLFVSLYASWCHSHMAIISLCLLAQTYQHANVVIQSLVEEDINSKFFIQLDKLIRLLETPIFASLRLQLLEPEKYK 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1811695 1819163 + Conep09aG0040400.1 Cone9ag0394 444557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0394 580 Pfam Vacuolar protein 14 C-terminal Fig4p binding 431 579 IPR021841 -
Cone9ag0394 580 Gene3D - 250 414 IPR011989 -
Cone9ag0394 580 Gene3D - 11 125 IPR011989 -
Cone9ag0394 580 FunFam protein VAC14 homolog isoform X1 253 412 - -
Cone9ag0394 580 SUPERFAMILY ARM repeat 9 531 IPR016024 -
Cone9ag0394 580 Pfam Vacuolar 14 Fab1-binding region 67 163 - -
Cone9ag0394 580 PANTHER TAX1 BINDING PROTEIN-RELATED 7 579 IPR026825 GO:0000306(PANTHER)|GO:0006661(PANTHER)|GO:0006661(InterPro)|GO:0010008(PANTHER)|GO:0070772(PANTHER)|GO:0070772(InterPro)
Cone9ag0394 580 ProSiteProfiles HEAT repeat profile. 94 129 IPR021133 -
Cone9ag0394 580 Gene3D - 126 249 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0394 K15305 - - rcu:8277349 914.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0732 Cone-Chr13:7031494 Cone9ag0394 Cone-Chr9:1811695 0 wgd
Cone19ag0736 Cone-Chr19:6036835 Cone9ag0394 Cone-Chr9:1811695 0 wgd
Cone6ag0363 Cone-Chr6:1778550 Cone9ag0394 Cone-Chr9:1811695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g493 Blo01g00771 Blo16g00753 Bda01g01796 Bda11g00185 Bpe13g01008 . . . Cmo04g01097 . Cma04g01022 Cma04g00076 Car04g00956 Car04g00072 Sed06g0157 . . Bhi07g00384 Tan04g1517 Cmetu10g0436 Lac13g1343 . . . Cla07g00543 Cam07g0582 Cec07g0645 Cco07g0610 Clacu07g0585 Cmu07g0620 Cre07g0956 . . Cone6ag0363 Cone9ag0394 Lsi04g01105 . . Cme10g01616 . . . Bda11g00185 . . Bma01g00488 Bma06g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003068 2 1 2 2 1 1 3 1 1 0 1 1 2 2 1 3 1 4 2 1 1 2 1 3 1 1 1 5 3 1 51