Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0399 ATGGCGTGTTTAATCTCTCGTACAGGAAGAGAGTTGCAGAGATATAGTAACATGGGCCTCCGCCAAGTTGTAGGTTGTATACCGTATAGATATAAAGATGGTAGCCTCAGCACAAATGAATTTGAAGTCCTTGTTATCAGTTCACAAAAAGGTCAAGGATTTATGTTCCCTAAGGGTGGGTGGGAAGTTGATGAATCTATGGAGGAAGCTGCTTCACGAGAATCTCTTGAAGAGGCTGGTGTTCTTGGAAACGTTGAGGGTGAATTAGGAAAATGGAGCTTCATTAGTAAAAGACACGACACATGTTATGAAGGTTACATGTTCCCTCTATTTGTTAAGGAGCAGCTTGAGTTTTGGCCAGAACAGCATGTTAGAGAAAGAATATGGATGAGTGTAGAGGAAGCACGAGAAGTATGTAGCCATTGGTGGATGAAAGAAGCTTTGAACATATTAGTTGAAAGGCTAACATCTTTGAATGAACAAGACCAAAATCTACTACTTTTTCAACAATAG 513 40.16 MACLISRTGRELQRYSNMGLRQVVGCIPYRYKDGSLSTNEFEVLVISSQKGQGFMFPKGGWEVDESMEEAASRESLEEAGVLGNVEGELGKWSFISKRHDTCYEGYMFPLFVKEQLEFWPEQHVRERIWMSVEEAREVCSHWWMKEALNILVERLTSLNEQDQNLLLFQQ 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1839856 1840900 + Conep09aG0040900.1 Cone9ag0399 444562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0399 170 CDD Nudix_Hydrolase_9 22 145 IPR047198 GO:0016462(InterPro)
Cone9ag0399 170 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 154 - -
Cone9ag0399 170 ProSitePatterns Nudix box signature. 59 80 IPR020084 GO:0016787(InterPro)
Cone9ag0399 170 SUPERFAMILY Nudix 12 154 IPR015797 -
Cone9ag0399 170 Pfam NUDIX domain 39 137 IPR000086 -
Cone9ag0399 170 FunFam Nudix hydrolase 17, mitochondrial 5 154 - -
Cone9ag0399 170 ProSiteProfiles Nudix hydrolase domain profile. 19 152 IPR000086 -
Cone9ag0399 170 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 4 162 - GO:0005634(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0399 K07766 - - csv:101208911 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0336 Cone-Chr13:2842398 Cone9ag0399 Cone-Chr9:1839856 1.96E-60 dispersed
Cone18ag1216 Cone-Chr18:8663998 Cone9ag0399 Cone-Chr9:1839856 9.93E-76 dispersed
Cone19ag0318 Cone-Chr19:2513407 Cone9ag0399 Cone-Chr9:1839856 5.92E-61 dispersed
Cone11ag0270 Cone-Chr11:1308157 Cone9ag0399 Cone-Chr9:1839856 3.16E-73 wgd
Cone6ag0369 Cone-Chr6:1805045 Cone9ag0399 Cone-Chr9:1839856 1.13E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g490 . Blo16g00750 . . . . . . . . . . . . . . Cpe01g01832 . . . . . . . . . . . . . . . . Cone6ag0369 Cone9ag0399 . . . . . . . . . . . Bma06g01128 . . Cmo15g01025 . Cma15g00978 . Car15g00924 Cpe13g00349 . Bhi12g00937 . . . . . . Cla01g00636 Cam01g0663 Cec01g0655 Cco01g0682 Clacu01g0652 Cmu01g0626 Cre09g1878 Lsi09g00685 . . Cme09g01347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001639 0 2 2 2 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 3 69