Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0404 ATGGCCGACCTGAAAGACAAGTTCAAGGGCTTCATGAACAAGGTTTCATCTTCTTCTTCTTCTAGCAAATTCAAAGGTCAGGGTAGAGTCCTTGGGTCGTCTTCTTCTGGGCCGGTTAATCCAATCCACGCCCGCCACTCGCAAAATACCAGCTCCAAAGCTTGCGTCTCTACGGTAACTTCTAAGCCTTCGACTGAAAAACCCCTAATTCCTGCTCACAATAATAGGTCGGAATCATCAGATACGTCGACTGTAAATCGTAAACCGTCCTATGGATTCGATCCATTTGACTCTTTCATCACTTCTGGGAATAGATCTCAGAATGGATATTCATTAAATGTCTATGAATGCCCAATTTGTGGGCAGTCCTATGGATCTGAAGAAGAGGTATCTGTTCATGTAGACACTTGTGTCGGTAATTCAGTCGAAAATAGCTCTATAGAAGTTGATAAGGAAGTTCCAAATAATGGGGCTGATTCCAATTCCAAGAGTGAGTTAGAGATTTGCGTTGGTACCTTTTTATCAGGGAAGAGATCAGAGGGTTCATTGGAAGTTGTTCTCAAGCTGTTTAGGAATATAGTAAGGGAACCGGAAAATTCAAAGTTTAGGAAGATTAGAATGAGTAATCCAAAGATTAGGGAGGCGATTGGTGATGTGGCTGGCGGGGTTGAGTTGTTCGAATTAGTTGGGTTTCAGTTACAAGAGGAAGATGGCGAGATGTGGGCAGCTATGGAGGTTCCAAAAAAGGAAGGAATTGATGTAATAAACAAGGTGATAGCTTTACTTGAACCACCTAAGGTAGAAGAAGAACTGCAAAAGAAAGGAACAGCTCAGGTGGACGAACCTGGTGAGCCGAAGAAAGATGAACCAGTTGAACCAAAGAAAATTGATAGACAGATACGGGTATTCTTTTCCGTTCCAGAAAGTGTTGCTGCAAAAATCGAGCTGCCAGATTCCTTCTACAACCTCTCTCTAGACGAGATAAAAAGAGAAGCTGATATGAAGAAGAAAAGGTTGGCAGAATCCCAGCTCTTGATCCCTAAATCACTGAAGGAAAAGCAAGCACAGGCTGCTAAAAGAAAATACAGAAGAACTGCTATAAGGATCCAGTTTCCAGACGGAACAGTTCTCCAAGGAATTTTTGCTCCCTGGGAAACAACTAACTCTCTCTATGAGTTTGTGAGCTCGTCATTGAAAGAGCAGTGCTTGGAATTTGAGCTGCTCCATCCCGTGCCGATAATGGTGAAAAGGCAGGTGATCCCTCATTTTCCGGCCTCAGGTGAGAAGCCTAGAACGTTAGAGGAAGAGTATCTGGTCCCTTCTGCTCTTATCAAGTTCAGACCTATTGAAACCGATTCTATCGTCTTCATTGGGCTTTGTAACGAGCTTCTTGAGATAAGTGAACCCCTGTTACCAGGTTCTGCCATTGCTCCTGCATAA 1440 43.33 MADLKDKFKGFMNKVSSSSSSSKFKGQGRVLGSSSSGPVNPIHARHSQNTSSKACVSTVTSKPSTEKPLIPAHNNRSESSDTSTVNRKPSYGFDPFDSFITSGNRSQNGYSLNVYECPICGQSYGSEEEVSVHVDTCVGNSVENSSIEVDKEVPNNGADSNSKSELEICVGTFLSGKRSEGSLEVVLKLFRNIVREPENSKFRKIRMSNPKIREAIGDVAGGVELFELVGFQLQEEDGEMWAAMEVPKKEGIDVINKVIALLEPPKVEEELQKKGTAQVDEPGEPKKDEPVEPKKIDRQIRVFFSVPESVAAKIELPDSFYNLSLDEIKREADMKKKRLAESQLLIPKSLKEKQAQAAKRKYRRTAIRIQFPDGTVLQGIFAPWETTNSLYEFVSSSLKEQCLEFELLHPVPIMVKRQVIPHFPASGEKPRTLEEEYLVPSALIKFRPIETDSIVFIGLCNELLEISEPLLPGSAIAPA 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1870228 1872379 + Conep09aG0041400.1 Cone9ag0404 444567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0404 479 ProSiteProfiles UBX domain profile. 360 446 IPR001012 GO:0005515(InterPro)
Cone9ag0404 479 Gene3D - 354 448 - -
Cone9ag0404 479 Pfam PUB domain 180 251 IPR018997 -
Cone9ag0404 479 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - GO:0050832(PANTHER)
Cone9ag0404 479 SUPERFAMILY PUG domain-like 180 260 IPR036339 -
Cone9ag0404 479 MobiDBLite consensus disorder prediction 270 292 - -
Cone9ag0404 479 Coils Coil 325 345 - -
Cone9ag0404 479 Gene3D - 175 263 - -
Cone9ag0404 479 FunFam UBX domain-containing protein 6 354 447 - -
Cone9ag0404 479 MobiDBLite consensus disorder prediction 12 87 - -
Cone9ag0404 479 SMART PGNneu 181 248 - -
Cone9ag0404 479 Pfam UBX domain 361 413 IPR001012 GO:0005515(InterPro)
Cone9ag0404 479 SUPERFAMILY Ubiquitin-like 333 446 IPR029071 -
Cone9ag0404 479 MobiDBLite consensus disorder prediction 1 87 - -
Cone9ag0404 479 CDD PUB 175 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0084 Cone-Chr7:370321 Cone9ag0404 Cone-Chr9:1870228 1.08E-07 dispersed
Cone7ag0399 Cone-Chr7:1775254 Cone9ag0404 Cone-Chr9:1870228 1.91E-06 dispersed
Cone6ag0375 Cone-Chr6:1826523 Cone9ag0404 Cone-Chr9:1870228 1.37E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0404 K14011 - csv:101209321 587.8