Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0410 ATGGCCACCCTTATCTCCATTGTTTTGATAATTTCCCATTTTCTTCTATCTTCACTTATCATCTGCTCGGTGACACACGGTAGCACCCATATTCCATGCAACCAAAGCCCATACCCTAAAGTTTGCTACCAATACCTGATCACCAGGAACAACAGTAATCTCCTCGAAGCCCTTGATCTTAAAACCAAACAGTACATGACATTTCTTGACCTATCCTTTCACGTAAGCATGCAACAAGCCATGCAAGTTTATCGCCACCTTGTGTCCGCCATGGAGTTACATACTGATTCATTTGATGATCACGATCATGATGATCAGCGAGCCAAGTCAGCATGGATTGATTGTTTAGAGCTCTATGAAGACACCATTTACAATCTCAACCGTTCGATTATGACCGGCTCTAAATCAAACCCAATAGACCACCTGACATGGTTAAGTGCATCGATCACAAATCATCAAACATGTCAAAATGGTTTTCTCGACTTCAATATTTATTCTCATCAAACACGATCCTTTCCTTCTCTACTAATCGATGACCTATCTAAGCTTCTTAGCAATTCTCTTGCGTTGACCAAGACTTATGACCAGAAACCAGTAACGATCAGAGGACGTCATCGTCGTTTGCTTAATTCCGATCATCATGATGGCCGTTTCCCGGAATGGGTTTCTCAAGCCGATAGAAAGCTTCTTCAGTCAGAAGAAAAGGCAGTCAATTCTATAAAGGCTGATCTAGTAGTAGCTCGAGATGGGTCAGGGAATTATAAAACCATTTCAGAGGCTGTGGAAGCAGCTAAGGAGGTAAGAAGTGGGAATGGGAGATTTGTTATATACGTGAAAGCGGGTGTTTATGAAGATAATGTGGAGATTAAGAAGACTATGAGAAACATTATGATTATTGGAGATGGAATTGGGTCTACAATCGTGATTGGTAGAAAGAATAAAAAGGACGGGTCAACTACGTATCGATCAGCCACTTTTGGGGTATCTGGTGATGGATTCATGGCTCGAGATATAACCTTTGAAAACACAGCCGGACCGGAAAAAGAACAAGCAGTAGCTCTGCGATCAGGATCCGATCAATCAGTTTTCTATCGTTGCAGCTTCAAAGGCTACCAAGATACCTTATACGTCTATTCTCAACGCCAGTTTTATCGTGACTGCGATATCTATGGAACTGTAGATTTCATTTTTGGCGATGCTGTAGCCGTCCTCCAAAACTGCAATATTTATGTCCGAAAACCAATGAACAAACAGAAAAACACAATCACGGCACAGGCAAGAACCGACGAGAATGAAAACACGGGCATCATTATCCATAACTGTAGGATCACGGCTTCATCCGATTTAAAACCCGAACAAAACTTGTACAAGACTTATCTTGGTAGGCCATGGAAGAAGTACTCGAGGGTGGTGATAATGAAAAGTCTTATAGATGGGGTGGTCGACCCAGCGGGGTGGCTACCGTGGAGAGGTGATTTTGGATTGACAACTCTTTATTACGGCGAGTTTATGAACAGTGGAAGTGGTGCAAGTGTTGAAGGTAGGGTTAAGTGGAGAGGTTACCATGTTATAAGCAGTGCTTCCGAGGCTGGGGAATTTACGGTTGGAAATTTCTTGGATGGAGATTCATGGATTCCTGGAACTGGAGTTCCCTTTGAAGCTGGGTTGTAA 1671 42.61 MATLISIVLIISHFLLSSLIICSVTHGSTHIPCNQSPYPKVCYQYLITRNNSNLLEALDLKTKQYMTFLDLSFHVSMQQAMQVYRHLVSAMELHTDSFDDHDHDDQRAKSAWIDCLELYEDTIYNLNRSIMTGSKSNPIDHLTWLSASITNHQTCQNGFLDFNIYSHQTRSFPSLLIDDLSKLLSNSLALTKTYDQKPVTIRGRHRRLLNSDHHDGRFPEWVSQADRKLLQSEEKAVNSIKADLVVARDGSGNYKTISEAVEAAKEVRSGNGRFVIYVKAGVYEDNVEIKKTMRNIMIIGDGIGSTIVIGRKNKKDGSTTYRSATFGVSGDGFMARDITFENTAGPEKEQAVALRSGSDQSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTVDFIFGDAVAVLQNCNIYVRKPMNKQKNTITAQARTDENENTGIIIHNCRITASSDLKPEQNLYKTYLGRPWKKYSRVVIMKSLIDGVVDPAGWLPWRGDFGLTTLYYGEFMNSGSGASVEGRVKWRGYHVISSASEAGEFTVGNFLDGDSWIPGTGVPFEAGL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1895925 1898014 + Conep09aG0042000.1 Cone9ag0410 444573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0410 556 NCBIfam pectinesterase inhibitor domain 10 194 IPR006501 GO:0004857(InterPro)
Cone9ag0410 556 SUPERFAMILY Pectin lyase-like 240 555 IPR011050 -
Cone9ag0410 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 193 IPR035513 -
Cone9ag0410 556 SMART PMEI_2 24 190 IPR006501 GO:0004857(InterPro)
Cone9ag0410 556 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Cone9ag0410 556 Pfam Pectinesterase 243 542 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone9ag0410 556 CDD PMEI-like_3 33 195 - -
Cone9ag0410 556 Gene3D - 237 556 IPR012334 -
Cone9ag0410 556 Pfam Plant invertase/pectin methylesterase inhibitor 33 190 IPR006501 GO:0004857(InterPro)
Cone9ag0410 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 194 IPR035513 -
Cone9ag0410 556 FunFam Pectinesterase 237 556 - -
Cone9ag0410 556 PANTHER PECTINESTERASE 8 546 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0832 Cone-Chr7:6238440 Cone9ag0410 Cone-Chr9:1895925 8.79E-135 dispersed
Cone8ag0030 Cone-Chr8:195245 Cone9ag0410 Cone-Chr9:1895925 6.73E-95 dispersed
Cone8ag0082 Cone-Chr8:430323 Cone9ag0410 Cone-Chr9:1895925 2.33E-116 dispersed
Cone14ag0592 Cone-Chr14:2935245 Cone9ag0410 Cone-Chr9:1895925 3.17E-136 transposed
Cone19ag0754 Cone-Chr19:6149629 Cone9ag0410 Cone-Chr9:1895925 8.50E-08 wgd
Cone6ag0383 Cone-Chr6:1864724 Cone9ag0410 Cone-Chr9:1895925 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0410 - - - 0.0