Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0412 ATGGCTGCAGAGGAGTTTAACAACTCTACAGGTCCCTCTATACCGCAGTATCCAGAGATAATCATAGCTGCGATCGAGGCACTAAACGACAAAGAAGGTTCAAGTAAGGCTGCAATTTCCAAGTACATGGAGTCGACGTATGGGAATCTCCCTGCGGCCCACTCCACGCTGGTCACTCACCACCTGGACAAGATGGAGCAGAGTGGCCAACTCCTTTTTGTTAAGAACAACTACTTGAAGCCCGGTCCAACTAGCCCAACTAAAAGGGGCCGTGGGCGTCCCCCTAAGCCCAAGGTCCCGCTTCCTCCTGGGACTGTACTTACTCCGCCTAGGCCACGTGGACGTCCGCCTAAGCCGAGAGACCCGTTTGCTCCGGTTCCGCAGGCGAAAAAGGTTTCGGGCAGCGGGAGGCCACGTGGGCGACCTTCGAAGAATGGTAAGGCGGCGGTGGCAACTGCCCCGCCGAACGGAGAGCGGAGAGGAAGGGGTCGACCGCCGAAAGTTAAGCCGTCTCTGGCAGCGGTGGAATGTTGA 534 57.12 MAAEEFNNSTGPSIPQYPEIIIAAIEALNDKEGSSKAAISKYMESTYGNLPAAHSTLVTHHLDKMEQSGQLLFVKNNYLKPGPTSPTKRGRGRPPKPKVPLPPGTVLTPPRPRGRPPKPRDPFAPVPQAKKVSGSGRPRGRPSKNGKAAVATAPPNGERRGRGRPPKVKPSLAAVEC 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1910825 1911747 + Conep09aG0042200.1 Cone9ag0412 444575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0412 177 PANTHER HISTONE H1 10 167 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cone9ag0412 177 SUPERFAMILY Winged helix DNA-binding domain 11 88 IPR036390 -
Cone9ag0412 177 MobiDBLite consensus disorder prediction 74 177 - -
Cone9ag0412 177 Pfam linker histone H1 and H5 family 15 76 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0412 177 MobiDBLite consensus disorder prediction 96 124 - -
Cone9ag0412 177 SMART AT_hook_2 159 171 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 SMART AT_hook_2 110 122 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 SMART AT_hook_2 88 100 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 SMART AT_hook_2 136 148 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 SMART h15plus2 11 77 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0412 177 PRINTS High mobility group protein (HMGY) signature 86 98 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0412 177 PRINTS High mobility group protein (HMGY) signature 125 144 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0412 177 PRINTS High mobility group protein (HMGY) signature 101 112 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0412 177 PRINTS High mobility group protein (HMGY) signature 112 123 IPR000116 GO:0000785(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0412 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 13 82 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0412 177 Gene3D - 9 93 IPR036388 -
Cone9ag0412 177 FunFam HMG-Y-related protein A 9 91 - -
Cone9ag0412 177 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677(InterPro)
Cone9ag0412 177 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0412 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0322 Cone-Chr13:2673651 Cone9ag0412 Cone-Chr9:1910825 1.39E-18 dispersed
Cone18ag1211 Cone-Chr18:8628199 Cone9ag0412 Cone-Chr9:1910825 4.83E-39 dispersed
Cone19ag0327 Cone-Chr19:2621025 Cone9ag0412 Cone-Chr9:1910825 4.41E-22 dispersed
Cone11ag0277 Cone-Chr11:1339991 Cone9ag0412 Cone-Chr9:1910825 3.49E-36 wgd
Cone13ag0745 Cone-Chr13:7097210 Cone9ag0412 Cone-Chr9:1910825 1.09E-30 wgd
Cone19ag0751 Cone-Chr19:6136839 Cone9ag0412 Cone-Chr9:1910825 2.18E-30 wgd
Cone6ag0385 Cone-Chr6:1877082 Cone9ag0412 Cone-Chr9:1910825 7.82E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g463 . . . . . . . . . . . . . . . . Cpe01g01840 . . . . . . . . . . . . . . Cone13ag0745 . Cone6ag0385 Cone9ag0412 . Csa05g02012 . . . . . . . . . . . . Cmo15g01006 . Cma15g00964 . Car15g00911 Cpe13g00360 . Bhi12g00922 . . . . . . Cla01g00621 Cam01g0649 Cec01g0642 Cco01g0667 Clacu01g0637 Cmu01g0611 Cre09g1891 Lsi09g00671 . Chy09g00839 Cme09g01371
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001668 2 2 1 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 70