Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0417 ATGAAAAGGGAACACCATCATCTGAATCTCCACCCTCAACCAGATCCACCGCCGTCCATCGCCGCCGGATCTATAGGCGGCGACATGGATGAGCTTTTGGCCGTTCTAGGTTACAAAGTAAGGTCATCTGACATGGCGGAAGTTGCTCAGAAACTCGAGCAGCTCGAAGAAGTCATGATGGGGAATCATCACGTTCACGGCGGAGATCAAGGCGGTGGCCTCTCTCAGCTCGCTTCTGAAACTATCCATTACAATCCTTCTGATCTATCGACCTGGCTCGGGAGCATGATCTCGGAGCTCCATCCGGATCCGATTTTCGACCAGATTGTCACTTCTCTGTCTCATCAGTCACAGTCATCCATCGATTTCGCCGAATCTTCCACCATAACAACCTCCATGGATTTCTCTGCAGATCAGAACTACAAACCGCCACAACAGCAGCAGCAGCAGAGTCAAGCAGAACTAGACTTCTCTTCTTCTTGCTCCGATTACGATCTCAAAGCTATTCCCGGTAAGGCTATTTATAGTAGTTCAGAAAACGCTGTTTCATCTAGAGAGAAGAAGCGGTTTAAACCTTCTCCTGGATCGGAAAATAATTTCGACTGGATCTCTAGTTTTTCTTCTTCAACAACAGCTACGACAACAAATACGGCGACTCGTCCTGTTGTAGTCGTTGACTCACAAGAAAACGGAATCCGACTCGTTCATGCTCTAATGGCTTGCGCTGAAGCGGTTCAGCGCAACAATCTTAACCTAGCTGAGGCTCTGGTCAAGCAGATCGGTTTCTTAGCGGTTTCTCAAGCCGGAGCCATGGGGAAGGTGGCTACCTTCTTCGCCGAAGCATTAGCTCGTCGGATTCTTCGTCAATTTCCTCCAACTCCGCTTAATTACTCTCTCTCTAACCTGCTTCAAATGCATTTCTACGAGAGCGCTCCTTACCTAAAATTCGCCCATTTCACGGCAAATCAAGCGATTTTAGAAGCTTTTGAAGGGAAGAAACGCGTCCACGTTATCGATTTTTCGATCAACCAGGGGATGCAATGGCCGGCTCTTATACAAGCTCTAGCTCTCCGGCAGGGTGGCCCGCCGGCTTTCCGGCTGACCGGGATCGGACCTCCGGCTCCTGATAACTCCGATTACCTTCAGGAAGTTGGATGGAAGCTCGCCCAGTTGGCGGATAGGGTTCACGTCGAGTTCGAGTACAGAGGCTTTGTGGCGAATAGCATAGCAGATCTCGACTCGTCCATGCTTTATCTCAGACCGAGTCACGTCGAGTCGGTGGCGGTTAGCTCGGTTTCCGAGATGCATAAATTGTTGGCCCGGCCGGGTGCGATGGACAAGGTGTTGTCTCTGGTGAAGGAGATTAAGCCGGAGATTGTTACCGTGGTTGAGCAGGAAGCGAACCACAACGGTCCTGTTTTTCTAGACCGGTTCACTGAGTCACTGCACTATTACTCGACTCTGTTCGACTCGTTAGAAGGATCGGTGAATAATCAGGACAAGGTCATGACGGAGATGTACTTGGGGGAGCAGATCTGTAACGTGGTGACTTGTGAAGGGGTAGACCGAGTTGAGCGGCACGAGCCCCTGATTCAGTGGCGGGCGCGGTTTGTATCGGCTGGGTTGGAACCGGTTCACCTCGGGTCCAACGCGTTCAAGCAAGCCAGTATGTTACTGGCTTTGTTCGGGAGTGGAGATGGGTACAGGGTGGAAGAGAACGATGGGTGCTTAATGCTTGGCTGGCACAGCCGCCCACTAATCGCGACGTCTGCATGGAGAGTGGGCGACACTGTGGCAGTCACTCACTGA 1809 51.3 MKREHHHLNLHPQPDPPPSIAAGSIGGDMDELLAVLGYKVRSSDMAEVAQKLEQLEEVMMGNHHVHGGDQGGGLSQLASETIHYNPSDLSTWLGSMISELHPDPIFDQIVTSLSHQSQSSIDFAESSTITTSMDFSADQNYKPPQQQQQQSQAELDFSSSCSDYDLKAIPGKAIYSSSENAVSSREKKRFKPSPGSENNFDWISSFSSSTTATTTNTATRPVVVVDSQENGIRLVHALMACAEAVQRNNLNLAEALVKQIGFLAVSQAGAMGKVATFFAEALARRILRQFPPTPLNYSLSNLLQMHFYESAPYLKFAHFTANQAILEAFEGKKRVHVIDFSINQGMQWPALIQALALRQGGPPAFRLTGIGPPAPDNSDYLQEVGWKLAQLADRVHVEFEYRGFVANSIADLDSSMLYLRPSHVESVAVSSVSEMHKLLARPGAMDKVLSLVKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGSVNNQDKVMTEMYLGEQICNVVTCEGVDRVERHEPLIQWRARFVSAGLEPVHLGSNAFKQASMLLALFGSGDGYRVEENDGCLMLGWHSRPLIATSAWRVGDTVAVTH 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1924848 1927188 + Conep09aG0042700.1 Cone9ag0417 444580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0417 602 ProSiteProfiles GRAS family profile. 225 593 IPR005202 -
Cone9ag0417 602 Pfam Transcriptional regulator DELLA protein N terminal 30 103 IPR021914 -
Cone9ag0417 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 186 592 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone9ag0417 602 Pfam GRAS domain family 234 593 IPR005202 -
Cone9ag0417 602 Gene3D - 28 100 IPR038088 -
Cone9ag0417 602 SMART DELLA_2 30 110 - -
Cone9ag0417 602 MobiDBLite consensus disorder prediction 135 155 - -
Cone9ag0417 602 MobiDBLite consensus disorder prediction 1 25 - -
Cone9ag0417 602 FunFam DELLA protein GAI 28 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0474 Cone-Chr5:2001375 Cone9ag0417 Cone-Chr9:1924848 1.03E-59 dispersed
Cone7ag0660 Cone-Chr7:3486769 Cone9ag0417 Cone-Chr9:1924848 3.79E-145 dispersed
Cone8ag0328 Cone-Chr8:1888603 Cone9ag0417 Cone-Chr9:1924848 2.36E-60 dispersed
Cone9ag0417 Cone-Chr9:1924848 Cone9ag1542 Cone-Chr9:11208012 1.03E-38 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone9ag0417 Cone-Chr9:1924848 1.37E-265 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone9ag0417 Cone-Chr9:1924848 2.32E-192 wgd
Cone19ag0747 Cone-Chr19:6093751 Cone9ag0417 Cone-Chr9:1924848 4.81E-266 wgd
Cone6ag0390 Cone-Chr6:1896382 Cone9ag0417 Cone-Chr9:1924848 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46790 PF04841 Vps16_N 1.30E-76 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0417 K14494 - rcu:8262526 788.489