Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0422 ATGGAAGGTCTACCGTCCGGTTACCGACCCAACGTCGGAGTTTGTCTCATCAACGACGATAATCTGGTGTTTGTGGCTTCAAGATTGAATGTTCCAGGAGCATGGCAGATGCCGCAGGGGGGTGTTGAAGATGATGAAGATCCCAAATTGGCAGCTGTTCGAGCATTGCGAGAGGAAACTGGTGTTGTCTCTGCAGAAATTATTGCCGAGGTGCCCAAATGGTTGACTTATGACTTTCCTCCTACCGTGAGGACCAAAGTGAATCGTCTCTGGGGAGGAGGTCAGTGGCATGGGCAGGCTCAAAAATGGTATCTTATGAGATTGACAAAAGACAACAGCGAGGTGAACTTAGCTAATGGCGAAACAGACACGGAATTCTCTGAGTGGAAATGGGCTACCCCTGATGAAGTTATCGAGCAGGCTGCAGATTATAAGAGGCCAACTTATGAAGAAGTGGTCAGGACCTTCAGGCCTTACTTGGAACCAACTGGGATATCTGAATCAGAGATGGAAACCTCCACGACTCGACCCCTTGAATTCCCTTCCCAAAATCCCAAAACCCTAATCCTGGAAGAGGAAGAAGAGAGGCATATCCGCATTGCTGGCTTGCTAAAGGACGCTATCTTCAACAACCTCTCCGGCAAGTATGTCAACGAATATCACTCCACCATCAACGCCGAGCATCTCAAATCCCAAATCGAGCGCCACCTCCTGGAACAACTTCCCTTCTTCCGTACGCCTTCTCATCCTCCATACGCTTCGATGATACAGAGGGCTATAGTTGAATTGGGGGAGGAAGGGGGATCGAGTGAGAAGACTATATCCGAGTTTATCAAGAGGGAGTATGAAGATTTGCCCTGGGCCCACACGGTTCTGGTCAAGCGCCATTTGGGGAAGCTTTGTGAGAGTGGAGAGCTTGAGGGTTCAAAATGTGGGCTTTATATGTTTCCGGTTGAAGATAAGAAATTGCTGAGGAAGAAAAAGAAAAAGAGGCGAGGGAAGGGGAGGGATTGCCTTCAAAGAGTAGTTAAGGATAGAGATGAGATTGACGATGTTAAGAGAAGGAAACAATCACTGAAATTAGGGACTAAAGGTGAAGTGGACAAAGGGATTGAAGAAAAGAGCACTGATTCTTGTACGGAGCAAAGTAAGGGGATCGAAGAAGATGATCGAGCACAAGGGTGTCTGGTTGGAGTGGTAGAAGAAGCCAGTGAAAGGAAAGATGGAGGAGTTGTAAAGATTGAAGAAAAGAGTGGAGAAGAAAGACGGGCAATGGAAGAACAGACTGAGGTTAAAACAGCAGAGGAAGATGAAATTATAGCCTACCATTCATGTCCTGAAGAAATATTACCAAGTGAAGAAGAAGTTGATGAACAAAATAAACTGCAAGAAAAACTACATGAGGTGAGCGATCAAAACAAGCAGCAGCAGGAAGAACAGCCAACACCTCGACGAGGCCGAGGCAGACCTCCCAAAGCTAAAACAGGTGATGAAACAGAATCCGAGGTTGGTAAAAGCTCGGGTTCTCATAACAACCAGGAAGGGAAGTCACCATTAAAGCTTGGGCAAGGTAGACCTTCCAAATCAAGAACAGATGAAGAACCATATTCCAAGGTGTTACGACAACTACCCTTAGATTCTCCCTCAAAAATTCGAGGCAGAGGAAGGCCTCCTAAGCCAAAATCAGAAGATGTTCAGACTAGTTCTAGTATTCAACTTTATATCGAAGAGCCACCGAATATAATTCCAGACAGTGCGGCTCCACCTCCTCGTCCTATATCAAAGACATATGAGGGCATGGCTAGAGGTGTATTATTACCCAGTAATAACCATCATCATAATGAAAAACAACGGCTGAAGTTGCCCTGCATTAGGGGCAGAGGAAGGGGAAGGGGCAGTGGCAGAGGAAGGCTGCCTATGGTGAGAGAAACCATAGATTGTACGGTTTCCAGATGA 1956 46.37 MEGLPSGYRPNVGVCLINDDNLVFVASRLNVPGAWQMPQGGVEDDEDPKLAAVRALREETGVVSAEIIAEVPKWLTYDFPPTVRTKVNRLWGGGQWHGQAQKWYLMRLTKDNSEVNLANGETDTEFSEWKWATPDEVIEQAADYKRPTYEEVVRTFRPYLEPTGISESEMETSTTRPLEFPSQNPKTLILEEEEERHIRIAGLLKDAIFNNLSGKYVNEYHSTINAEHLKSQIERHLLEQLPFFRTPSHPPYASMIQRAIVELGEEGGSSEKTISEFIKREYEDLPWAHTVLVKRHLGKLCESGELEGSKCGLYMFPVEDKKLLRKKKKKRRGKGRDCLQRVVKDRDEIDDVKRRKQSLKLGTKGEVDKGIEEKSTDSCTEQSKGIEEDDRAQGCLVGVVEEASERKDGGVVKIEEKSGEERRAMEEQTEVKTAEEDEIIAYHSCPEEILPSEEEVDEQNKLQEKLHEVSDQNKQQQEEQPTPRRGRGRPPKAKTGDETESEVGKSSGSHNNQEGKSPLKLGQGRPSKSRTDEEPYSKVLRQLPLDSPSKIRGRGRPPKPKSEDVQTSSSIQLYIEEPPNIIPDSAAPPPRPISKTYEGMARGVLLPSNNHHHNEKQRLKLPCIRGRGRGRGSGRGRLPMVRETIDCTVSR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1944622 1949364 + Conep09aG0043200.1 Cone9ag0422 444585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0422 651 SUPERFAMILY Winged helix DNA-binding domain 245 328 IPR036390 -
Cone9ag0422 651 Gene3D - 245 377 IPR036388 -
Cone9ag0422 651 Coils Coil 417 437 - -
Cone9ag0422 651 MobiDBLite consensus disorder prediction 406 443 - -
Cone9ag0422 651 MobiDBLite consensus disorder prediction 406 596 - -
Cone9ag0422 651 MobiDBLite consensus disorder prediction 624 651 - -
Cone9ag0422 651 Pfam linker histone H1 and H5 family 249 310 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0422 651 PRINTS AT-hook-like domain signature 518 529 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 PRINTS AT-hook-like domain signature 549 559 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 PRINTS AT-hook-like domain signature 484 494 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 ProSiteProfiles Nudix hydrolase domain profile. 7 154 IPR000086 -
Cone9ag0422 651 MobiDBLite consensus disorder prediction 455 504 - -
Cone9ag0422 651 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 160 - -
Cone9ag0422 651 CDD H15 246 310 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0422 651 Coils Coil 452 479 - -
Cone9ag0422 651 CDD Ap4A_hydrolase_plant_like 7 156 IPR022927 -
Cone9ag0422 651 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 248 318 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0422 651 SMART h15plus2 246 312 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone9ag0422 651 SUPERFAMILY Nudix 7 159 IPR015797 -
Cone9ag0422 651 SMART AT_hook_2 551 563 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 SMART AT_hook_2 484 496 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 SMART AT_hook_2 520 532 IPR017956 GO:0003677(InterPro)
Cone9ag0422 651 PANTHER HISTONE H1 244 520 - GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0005730(PANTHER)|GO:0030261(PANTHER)|GO:0031492(PANTHER)|GO:0045910(PANTHER)
Cone9ag0422 651 MobiDBLite consensus disorder prediction 363 387 - -
Cone9ag0422 651 Pfam NUDIX domain 8 150 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0422 K26955 - - cit:102608969 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0967 Cone-Chr11:7843009 Cone9ag0422 Cone-Chr9:1944622 2.03E-39 dispersed
Cone18ag0606 Cone-Chr18:3059975 Cone9ag0422 Cone-Chr9:1944622 1.43E-60 dispersed
Cone6ag0397 Cone-Chr6:1921334 Cone9ag0422 Cone-Chr9:1944622 1.65E-123 transposed
Cone6ag0396 Cone-Chr6:1919005 Cone9ag0422 Cone-Chr9:1944622 2.62E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93