Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0428 ATGACTAAAGAAGACGACTTCAAGCTACTCAAGATCCAGACTTGTGATCTCAGAGTGAACATCCATTGTGATGGGTGTAAGCAGAAAGTAAAGAAAATCCTTCAGAGGATTGAAGGTGTTTTCCAAGTGAAAATAGAAGATGTGCAGCAAAAAGTTACAGTCTTAGGCAGTGTAGACTCTGCCACGTTGATCAAGAAGTTGGAAAGAGCAGGAAAACATGCTGAAATCTGGTCCATGAAACCCAATCAAACTCAAAAACAGAAGAACAGCGCCAATATCAACAACAAAAATGAATGCAAGACCAATAATAATGACACTAAAGGAGGAGCTCCCAAACAAAGCATACTAAAAGGCCTTGAAGCCTTCAAGAACCAGCACAAGCAATCCTCGTTCTCCTGCTACGATGACAATGGCTGCAATTTCAATGACGATGAAGGGGAAGAAGAAGATGATGACGCCGAAGAGGATGAGCTACGGTTGCTTAGAGAGAAAGCAAACCAGATTGGGTTTCTTAGGCAACAAGCAGCTATCCAAGCGAACAATAATGCCCTCAAAGCAAAAATGAACAACAGTTTAGGAAACGTGGGGAAGCCAAATGAACAGAATCAGAACATGGGTAGTAGGGCAAGTGTGATTGATCCTAAAACAATGGCGGCCTTGAAAATGAACAATGCTACCAATGGTGGGGATGGGAGAAGAGGGAGTAGTGATCTTGCTACAATGATGAACTTAGCAGGGTTCAACGGCGCTGCTGGTAACAGTAATATTCCGGCAAATGTTTCTTCTGGAGGGTATCAAATTCAACCTAACAATAATGGATATTCTCCAAACGTTATGAACATGAGTAATGGGTATAATGGTAATTATAATCAATCATCACCTTTGATGATGAACCTGCAGCAGCAGCAGCAACAGCAACAGCCGCAGATGATGTATCATAGATCACCCAATAATCCTCCTACCACTGGTTATTATTATAATTACAGCAATCCCCCTACCCCTTCGTATGCACCACCTTACTCGCACTACACTCATGAACCTTATTACAGTGATGGTCATAACTCTGCAGCAGCCAATGATGAGAACACAACAACAGGCGGTTGTTCCGTTATGTAA 1116 42.2 MTKEDDFKLLKIQTCDLRVNIHCDGCKQKVKKILQRIEGVFQVKIEDVQQKVTVLGSVDSATLIKKLERAGKHAEIWSMKPNQTQKQKNSANINNKNECKTNNNDTKGGAPKQSILKGLEAFKNQHKQSSFSCYDDNGCNFNDDEGEEEDDDAEEDELRLLREKANQIGFLRQQAAIQANNNALKAKMNNSLGNVGKPNEQNQNMGSRASVIDPKTMAALKMNNATNGGDGRRGSSDLATMMNLAGFNGAAGNSNIPANVSSGGYQIQPNNNGYSPNVMNMSNGYNGNYNQSSPLMMNLQQQQQQQQPQMMYHRSPNNPPTTGYYYNYSNPPTPSYAPPYSHYTHEPYYSDGHNSAAANDENTTTGGCSVM 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1973026 1974840 + Conep09aG0043800.1 Cone9ag0428 444591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0428 371 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872(InterPro)
Cone9ag0428 371 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872(InterPro)
Cone9ag0428 371 MobiDBLite consensus disorder prediction 355 371 - -
Cone9ag0428 371 MobiDBLite consensus disorder prediction 82 110 - -
Cone9ag0428 371 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872(InterPro)
Cone9ag0428 371 Gene3D - 12 84 - -
Cone9ag0428 371 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 5 371 - -
Cone9ag0428 371 MobiDBLite consensus disorder prediction 352 371 - -
Cone9ag0428 371 CDD HMA 16 75 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0216 Cone-Chr7:924195 Cone9ag0428 Cone-Chr9:1973026 1.16E-23 dispersed
Cone7ag1840 Cone-Chr7:11958676 Cone9ag0428 Cone-Chr9:1973026 5.80E-07 dispersed
Cone6ag0405 Cone-Chr6:1947003 Cone9ag0428 Cone-Chr9:1973026 3.02E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00865 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010233 3 1 3 2 2 1 1 0 1 1 0 0 1 1 1 1 0 2 0 0 1 1 1 1 1 0 1 3 1 1 32