Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0435 | ATGGCGGTTTTACCTATTAGCTCATCGAGCTTGGAATTGACCATATCTGTGTCTGGTTTTGCTTCATCTCCTTCTCTTCCTAATTCATCTGGTGATCAAAGAGGTGGTTCAGTGAGAGACTTAGACATAAATCAAGTACCAGTAGTAGAAGAAGATGAATGGATTACAGGAAGCATGGAAGATGAAGAAGAAAGCAGCATTAATGGAGGATCAGAACCTCCACGGAAAAAACTCCGTCTCACAAAGGAACAATCTCGCCTCCTCGAAGAAAGCTTCAAACAAAATCACACCTTGAATCCTAAGCAGAAAGAGGGTTTAGCTGTGCAGTTGAAGTTGAAGCCCCGACAAGTTGAGGTATGGTTCCAGAACCGTAGGGCCAGGAGCAAATTGAAGCAGATAGAGATGGAACGTGAGTACTTAAAGAGGTGGTTCGGATCACTTGCGGAGCAGAACAGGAGGCTACAGAAGGAAGTGGAGGAGCTAAGGGGCTTCAACGTGAAGGTGGGCCGCCACCCCACCATGATCTCGCCGCACGGCGGTGAACCTCTCACTGCTTCATCCCTCTCCATGTGTCCTCGCTGTGAGAGAGTGACCAGCTCCACCGTGCAATCAAACCCGGCTGCAGGCCCCACATTGATGTCGGCCAAAGTTTTATCGCTGGTCCGCCAGTCAGGACAGTCTCCGGCTGCATGTTAA | 696 | 49.28 | MAVLPISSSSLELTISVSGFASSPSLPNSSGDQRGGSVRDLDINQVPVVEEDEWITGSMEDEEESSINGGSEPPRKKLRLTKEQSRLLEESFKQNHTLNPKQKEGLAVQLKLKPRQVEVWFQNRRARSKLKQIEMEREYLKRWFGSLAEQNRRLQKEVEELRGFNVKVGRHPTMISPHGGEPLTASSLSMCPRCERVTSSTVQSNPAAGPTLMSAKVLSLVRQSGQSPAAC | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2006434 | 2008303 | - | Conep09aG0044500.1 | Cone9ag0435 | 444598 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0435 | 231 | ProSitePatterns | 'Homeobox' domain signature. | 106 | 129 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cone9ag0435 | 231 | SMART | HOX_1 | 73 | 135 | IPR001356 | GO:0003677(InterPro) | |
Cone9ag0435 | 231 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Cone9ag0435 | 231 | FunFam | Homeobox-leucine zipper protein 18 | 60 | 136 | - | - | |
Cone9ag0435 | 231 | Pfam | Homeobox associated leucine zipper | 131 | 162 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone9ag0435 | 231 | MobiDBLite | consensus disorder prediction | 19 | 78 | - | - | |
Cone9ag0435 | 231 | SUPERFAMILY | Homeodomain-like | 61 | 132 | IPR009057 | - | |
Cone9ag0435 | 231 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 58 | 205 | IPR050762 | - | |
Cone9ag0435 | 231 | Gene3D | - | 67 | 137 | - | - | |
Cone9ag0435 | 231 | SMART | halz | 131 | 176 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone9ag0435 | 231 | Pfam | Homeodomain | 75 | 129 | IPR001356 | GO:0003677(InterPro) | |
Cone9ag0435 | 231 | CDD | homeodomain | 74 | 132 | IPR001356 | GO:0003677(InterPro) | |
Cone9ag0435 | 231 | ProSiteProfiles | 'Homeobox' domain profile. | 71 | 131 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone9ag0435 | Cone-Chr9:2006434 | Cone9ag1406 | Cone-Chr9:10475756 | 4.07E-39 | dispersed | |
Cone6ag0412 | Cone-Chr6:1989040 | Cone9ag0435 | Cone-Chr9:2006434 | 9.91E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46792 | PF00154 | RecA | 3.00E-110 | CL0023 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0435 | K09338 | - | vvi:100257750 | 293.893 |