Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0435 ATGGCGGTTTTACCTATTAGCTCATCGAGCTTGGAATTGACCATATCTGTGTCTGGTTTTGCTTCATCTCCTTCTCTTCCTAATTCATCTGGTGATCAAAGAGGTGGTTCAGTGAGAGACTTAGACATAAATCAAGTACCAGTAGTAGAAGAAGATGAATGGATTACAGGAAGCATGGAAGATGAAGAAGAAAGCAGCATTAATGGAGGATCAGAACCTCCACGGAAAAAACTCCGTCTCACAAAGGAACAATCTCGCCTCCTCGAAGAAAGCTTCAAACAAAATCACACCTTGAATCCTAAGCAGAAAGAGGGTTTAGCTGTGCAGTTGAAGTTGAAGCCCCGACAAGTTGAGGTATGGTTCCAGAACCGTAGGGCCAGGAGCAAATTGAAGCAGATAGAGATGGAACGTGAGTACTTAAAGAGGTGGTTCGGATCACTTGCGGAGCAGAACAGGAGGCTACAGAAGGAAGTGGAGGAGCTAAGGGGCTTCAACGTGAAGGTGGGCCGCCACCCCACCATGATCTCGCCGCACGGCGGTGAACCTCTCACTGCTTCATCCCTCTCCATGTGTCCTCGCTGTGAGAGAGTGACCAGCTCCACCGTGCAATCAAACCCGGCTGCAGGCCCCACATTGATGTCGGCCAAAGTTTTATCGCTGGTCCGCCAGTCAGGACAGTCTCCGGCTGCATGTTAA 696 49.28 MAVLPISSSSLELTISVSGFASSPSLPNSSGDQRGGSVRDLDINQVPVVEEDEWITGSMEDEEESSINGGSEPPRKKLRLTKEQSRLLEESFKQNHTLNPKQKEGLAVQLKLKPRQVEVWFQNRRARSKLKQIEMEREYLKRWFGSLAEQNRRLQKEVEELRGFNVKVGRHPTMISPHGGEPLTASSLSMCPRCERVTSSTVQSNPAAGPTLMSAKVLSLVRQSGQSPAAC 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2006434 2008303 - Conep09aG0044500.1 Cone9ag0435 444598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0435 231 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone9ag0435 231 SMART HOX_1 73 135 IPR001356 GO:0003677(InterPro)
Cone9ag0435 231 MobiDBLite consensus disorder prediction 19 35 - -
Cone9ag0435 231 FunFam Homeobox-leucine zipper protein 18 60 136 - -
Cone9ag0435 231 Pfam Homeobox associated leucine zipper 131 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0435 231 MobiDBLite consensus disorder prediction 19 78 - -
Cone9ag0435 231 SUPERFAMILY Homeodomain-like 61 132 IPR009057 -
Cone9ag0435 231 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 58 205 IPR050762 -
Cone9ag0435 231 Gene3D - 67 137 - -
Cone9ag0435 231 SMART halz 131 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0435 231 Pfam Homeodomain 75 129 IPR001356 GO:0003677(InterPro)
Cone9ag0435 231 CDD homeodomain 74 132 IPR001356 GO:0003677(InterPro)
Cone9ag0435 231 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0435 Cone-Chr9:2006434 Cone9ag1406 Cone-Chr9:10475756 4.07E-39 dispersed
Cone6ag0412 Cone-Chr6:1989040 Cone9ag0435 Cone-Chr9:2006434 9.91E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46792 PF00154 RecA 3.00E-110 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0435 K09338 - vvi:100257750 293.893