Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0440 ATGGACAAGGCTTTGTTGCCGGAGAGGAAAGAAGAAGGTTTTGCATGGCCACAGTGTAAATGGGATGTTTTTGTTCAAGAAGCCAAGAGTGTTGGTTATATAGCTGGCCCTCTTGTCGCTGCAAATTTCTCACAATATTTCCTGCAAATCATTTCTATCATGATGGTTGGTCATCTTGATCAGCTTTCTCTCTCTAGCACTGCCGTTGCCATCTCTCTCGCGGCTGTTTCCGGCTTTAGCATTCTGTTGGGAATGTCTAGTGCACTCGAAACACTATGCGGGCAAGCTTATGGAGCTCAACAATATCACCATCTCAGAACACAAACTTTCACTGCAATTTTCTCTCTCAACTTAGTTTCAATCCCTATCTCCATAATATGGATTTACATGGGAGACCTACTTGCTCTCATCGGCCAGGATCCTGAAATTGCCGACCAAGCCGGAAAATTCATAGTATGGCTCATCCCTTCACTCTTCGCCTATGGAACTCTTCAAGCCCTCATCCGATATTTTCAAACCCAAAGCTTAATCATTCCCCTATTAGTAAGCTCTTGCGCCTCTCTTTGTTTCCACATCCCAGCTTGTTGGCTCTTAGTATTCAAGTTCGGTTTAGGACATGTCGGAGCAGCATTAGCAATCGGTTTGTCTTATTGGCTAAACGTGATTTTACTCGGACTTCATATGATATCTTCCCCTGCCTGTGAGAAAACCCGGGTCCTGTTTTCTATGGAAGTGTTTAGAGGAATCGGAGAGTTCTTCCGCTTTGCTATTCCTTCTGCTGTTATGATCTGCCTTGAATGGTGGGCGTTTGAACTTCTTACATTGCTCTCTGGATGGTTGCCAAATCCGAAACTCGAGACTTCGGTTTTATCTGTATGTTTGTCGACGATTTCAACCTTATATATGATAGGAGATGGACTCGGTGCAGCAGCAAGCACTAGAGTTTCAAATGAGCTGGGGGCGGGAAATCCAGGAGCAGCCCGGATAGCCGTTTGCACAGTTATGGCAATTACAGTTACAGAGGCAGTTATAGTAAGCTCGATCTTGTACACAAGCCGATGCATTTTCGGTTACACTTTTAGCAACGAGGAGAAAGTGGTTAGTTATGTCACTTCTATGGCTCCTCTAGTGTGTTGCTCGGTCATTCTAGACAGTTTACACGGCGCTCTTTCAGGTGTTGCAAGGGGTTGTGGATGGCAAGACTTGGGTGCTTATGTGAATCTTGGGGCTTATTATCTTTTCGGGATTCCAGTCGGGGTTTTGTTGGGATTTTGGTTTGGTTTGAGAGGAAGAGGCCTTTGGATTGGAATACTTAGTGGTACTTTGTTGCAAACTCTTCTGCTCTCTATCATAACTATATGCACAAACTGGGAAAAACAGGCCGAAAAAGCGAGGGAGAGAATGTTTTCAAGACGAGACCTTTCCGAAACTAGATCGATTTCTTAA 1446 44.47 MDKALLPERKEEGFAWPQCKWDVFVQEAKSVGYIAGPLVAANFSQYFLQIISIMMVGHLDQLSLSSTAVAISLAAVSGFSILLGMSSALETLCGQAYGAQQYHHLRTQTFTAIFSLNLVSIPISIIWIYMGDLLALIGQDPEIADQAGKFIVWLIPSLFAYGTLQALIRYFQTQSLIIPLLVSSCASLCFHIPACWLLVFKFGLGHVGAALAIGLSYWLNVILLGLHMISSPACEKTRVLFSMEVFRGIGEFFRFAIPSAVMICLEWWAFELLTLLSGWLPNPKLETSVLSVCLSTISTLYMIGDGLGAAASTRVSNELGAGNPGAARIAVCTVMAITVTEAVIVSSILYTSRCIFGYTFSNEEKVVSYVTSMAPLVCCSVILDSLHGALSGVARGCGWQDLGAYVNLGAYYLFGIPVGVLLGFWFGLRGRGLWIGILSGTLLQTLLLSIITICTNWEKQAEKARERMFSRRDLSETRSIS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2035644 2038019 + Conep09aG0045000.1 Cone9ag0440 444603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0440 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 460 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone9ag0440 481 NCBIfam MATE family efflux transporter 37 434 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone9ag0440 481 Pfam MatE 258 420 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone9ag0440 481 Pfam MatE 37 197 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone9ag0440 481 CDD MATE_eukaryotic 27 463 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0440 K03327 - - vvi:100255994 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0593 Cone-Chr14:2937451 Cone9ag0440 Cone-Chr9:2035644 3.81E-178 dispersed
Cone2ag0747 Cone-Chr2:33264065 Cone9ag0440 Cone-Chr9:2035644 2.99E-127 dispersed
Cone9ag0179 Cone-Chr9:791541 Cone9ag0440 Cone-Chr9:2035644 5.80E-105 dispersed
Cone9ag0440 Cone-Chr9:2035644 Cone9ag1079 Cone-Chr9:6173798 7.11E-94 dispersed
Cone19ag0795 Cone-Chr19:6413602 Cone9ag0440 Cone-Chr9:2035644 2.34E-220 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g388 . . . . . . . . . . . . . . . . . Bhi07g01251 . . Lac13g0551 Hepe01g1148 . . . . . . . . . . . . Cone9ag0440 . Csa05g02661 Chy10g00269 Cme10g00210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82