Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0441 ATGACCCTCTGCGCCATTGCTTCTAAAGCTCTAGCTACTGCTGCTGCTTCTCACCATTTTTATCTCAAGGTACGCATTATCTTCCCCTTCGCTTCCTTTCTCCATACCTTCTCCTCCTCCCCGAAAAGCAAGACCTTCGCGCCAATCTCCATCATCCATTACAAGGACCTTATCTTTGACACCATTGACAAGAAGCCTTGGGCCTTTTGCAACCGTAAGTGGGTTTCTGATCAATTTCAAGCTGTGATTATTGACCCTCACTTGCTTACTAGAGTCCTTGATTCGATCCGGTTTAGACCCAGAATAGCTTTGCGGTTCTTTAGATGGATTGAGGGTCAACCTGACTTCAAAGGATCGGAGTTTGCTTTTTGTGCTATGCTTGAAATTCTTGCTCAGAACAATCTGATGCCTTCTGCTCATTGGGTGATGGAGAAAGTAATTAGTTTGAATATGCATGGAGTTGTGGATGTTTTGACCGATGGGCATTTTTGTTCTAGGATTTCCATTAAGCTTCTCGATCTATTGTTATGGATTTACACTAAAAAATCCATGGTTGAACAATGCTTGTCGGTTTTCAATAAAATGATACAAAATGGGTTTCTTCCTGATGTGAAGAATTGTAATAGGATACTTAGGATTCTTAGGGATAAGAATCTTATGGTCAAGGCTACAGAAGTGTATCAAGTTATGGGCGAGGTTGGGATTATGCCGACAATAGTGACTTATAATACTATGTTGGATTCGTTTTGCAAGGAAGGGGAAGTGCAGCAAGCATTAGAGCTTCTATTGGAAATGCAGAAGGCAGGCTTTTCGCCTAATGATGTAACATATAATGTGTTGGTCAATGGATTGTCCAAGAAGGGGAATCTAGATCAGGCCAAGGGGTTGATCAATGAGATGATAAAATTGGGATTGGAAGTCTCGGCCTATACTTATAATCCTTTGATTCGTGGGTATTTCAATAGAGGGTTGCTTCTTGAGGCTTCAAGCCTTGGGGAAGAGATGGTTCATTTAGGAGCTTCCCCTACGGTTTCTACTTATAATACATCCATGTATGGCCTTTGCAAGTGGGGAAGAGTAAATGAAGCTAGAAAGAAGTTTTATGATATGATTGGGAAGAATTTGATGCCAGATGTTATTTCTTATAACATCCTAATTTATGGCTATTGTAGAATGGGGAACATAAGGGAAGCTTTTCGTTTGTTTGATGAATTGAGACAAAGGAACCTAATCCCAACTGTTGTTACTTATAATGCACTTATTGATGGTCTTAGCCGTATAGGGGACTTTAAGGTTGCACTACAAATGAAAGATGAAATGATTGATCATGCAATAAACCCTGACGTGTTTACTTATACTATATTGATTAATGGGTCGTGCAAAATGGGAAATTTGTCTCTAGCTGAGGAGTTCTTCAACGAGATGTTGTCTCTAGGTTTGGAGCCTGATCTTTTTGCATATAATACCCGGATTGTAGCTGAAATGAAGCTAGGTGATCCATCTAAGGCTTTCAGCATGCAAGAAGAAATGTTAGAAAAAGGGTTTCCTCCCAATCACATTACATATAATGTTTTTGTTCATGGTCTATGTAGACTTGGAAATTTGGAAGACGCATTTGATATGTTATCTAAAATGGTTAATGATGGTCTTGCTCCGGATCACGTGACTTATACTAGCATTATTTTTGCCCATTTAGAAAATGGGCACTTAAGGAAAGCTAGGGAGGCCTTTTACGAAATGATTAGCAAAGGCTTGTCGCCTTCTGTTGTAACGTATACGACATTGATTCATGCTCATGCAGGGAAAGGGAGATTGGAATTGGCCTTTATGTATTTCTCAGAGATGCAAGGGAAGGGTGTTTTGCCAAATGTTATCACTTACAATGCATTGATTAATGGTCTTTGTAAAATGAAGAGAATGGATCAGGCTTATAAGTTTTTAGCTGAGATGAAAGGTAGAGGAATATTTCCAAATAAGTATACCTATACGATATTGGTAAGTGAGAATTGTAACACGGGCAATTGGACTGAGGCTTTAAGATTCTACAAAGAAATGCTGGACAGAGAGATTCAGCCTGATTCTTGTACTTATAGTGCATTATTTAAGCAACTGCAGAAAGACTATAGAGTGCATGCAATTCAGTGCTTGGAGAGTTTGATATTGAGTAATGAAGAAATTGCAGAAGCGGAATGTTGA 2196 39.25 MTLCAIASKALATAAASHHFYLKVRIIFPFASFLHTFSSSPKSKTFAPISIIHYKDLIFDTIDKKPWAFCNRKWVSDQFQAVIIDPHLLTRVLDSIRFRPRIALRFFRWIEGQPDFKGSEFAFCAMLEILAQNNLMPSAHWVMEKVISLNMHGVVDVLTDGHFCSRISIKLLDLLLWIYTKKSMVEQCLSVFNKMIQNGFLPDVKNCNRILRILRDKNLMVKATEVYQVMGEVGIMPTIVTYNTMLDSFCKEGEVQQALELLLEMQKAGFSPNDVTYNVLVNGLSKKGNLDQAKGLINEMIKLGLEVSAYTYNPLIRGYFNRGLLLEASSLGEEMVHLGASPTVSTYNTSMYGLCKWGRVNEARKKFYDMIGKNLMPDVISYNILIYGYCRMGNIREAFRLFDELRQRNLIPTVVTYNALIDGLSRIGDFKVALQMKDEMIDHAINPDVFTYTILINGSCKMGNLSLAEEFFNEMLSLGLEPDLFAYNTRIVAEMKLGDPSKAFSMQEEMLEKGFPPNHITYNVFVHGLCRLGNLEDAFDMLSKMVNDGLAPDHVTYTSIIFAHLENGHLRKAREAFYEMISKGLSPSVVTYTTLIHAHAGKGRLELAFMYFSEMQGKGVLPNVITYNALINGLCKMKRMDQAYKFLAEMKGRGIFPNKYTYTILVSENCNTGNWTEALRFYKEMLDREIQPDSCTYSALFKQLQKDYRVHAIQCLESLILSNEEIAEAEC 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2038654 2042640 + Conep09aG0045100.1 Cone9ag0441 444604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 415 449 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 555 589 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 590 624 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 520 553 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 380 413 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 450 483 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 179 204 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 486 518 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 346 379 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 240 273 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 660 694 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 275 308 IPR002885 -
Cone9ag0441 731 NCBIfam pentatricopeptide repeat 625 658 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat 175 200 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat 445 475 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 622 671 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 552 600 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 237 286 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 309 356 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 482 531 IPR002885 -
Cone9ag0441 731 Pfam PPR repeat family 377 425 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Cone9ag0441 731 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 308 620 - -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Cone9ag0441 731 SUPERFAMILY HCP-like 359 551 - -
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 231 300 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 301 370 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 87 230 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 371 441 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 509 581 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 582 650 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 442 508 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 Gene3D Tetratricopeptide repeat domain 651 719 IPR011990 GO:0005515(InterPro)
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Cone9ag0441 731 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0441 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27