Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0445 ATGTCGAGTAGTGTTGAAGTGAAGAGAGTATTCGTCGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCATGGGGAGCCTCTGATTTCGTGGCCTTTGGTGCTCAAAACGCAGTCGCTATTTTCTGTCCGAAGACTGCAGAAATTTTGACTACGCTTCCAGGCCACAAGGCCTCTGTCAACTGCACCCACTGGCTTCCAAGCACTAAGTTCGCATTTAAAGCCAATAATTTAGACCGGAATTATCTGCTTTCGGGCGATGCTGAGGGTGCCATTATTTTGTGGGAATTTTCTCTACTTGAGAGAAAGTGGAGACATGTGTTACGACTGCCAGAATCTCACAAGAAGGGTGTCACATGCATTACTGCAATCATGGTCTCTGAAAATGAGGCTATCTTTGCTTCTACTTCGTCAGATGGTACAGTTCATATATGGGACATGGCTTTTCCATCCGCTAATGAAGGTGATCCTAAGTTAATGTTTGTGGAATCTCTTTTTATTGGCCCAAAATCTATGGTTGCACTTTCATTAGCGGAATTGCCTGGAAATACAGGCCACATAGTCTTGGCAATGGGTGGATTAGACAACAAAATCCATCTATATTGTGGAAAAAGATCCGGAAAATTTGTCCGTGCATGTGAGTTGAAAGGACATACAGATTGGATTCGAAGCTTGGACTTCTCATTACCAATAAATGATGAAGCACATAGTTTTCTTCTTGTAAGTTCATCTCAAGACAGAGGAATACGTATATGGAAGATGGCTCTACGTGATTCACAAGCCGAAAAGGAAATAAGTTTAGCATCATATATTGAAGGTCCTCAACTCAGAGCTGGTTCAGCTTGTTATCAGATATCTTTGGAATCTCTTCTTATAGGACATGAAGATTGGGTCTACTCAGTAGAGTGGCAACCTCCTTTTAGCTCAACCACAGAAGGAATCACTACTTGCTATCAACCTCAAAGCATCTTGTCTGCATCAATGGACAAGACAATGATGATCTGGCAACCTGAGAGGACATCTGGTATTTGGATGAATGTGGTGAGTGTTGGGGAGTTAAGCCATTGTGCTTTAGGGTTTTATGGTGGCCATTGGAGCCCAGATGGAGATTCAATATTGGCACATGGATATGGTGGATCCTTCCATCTTTGGAAAAATATTGGGGGCAATTTAGGTAACTGGCAACCACAGAAAGTTCCTTCTGGGCACTTCGCTGCTGTAACGGATATTTCTTGGGCCAGATCGGGTGATTACATGCTTTCAGTTAGTCATGACCAGACTACTCGAATTTTCACCCCATGGAAGAATGAATTTTCTCTTAGTGGCGGGTGCTCTTGGCATGAAATAGCTCGGCCCCAAGTTCATGGTCATGATATCAATTGTGTAACCATTATCCAAGGAAAAGGAAATCATCGTTTTGTGAGTGGAGCTGAAGAGAAAGTTGCCCGAGTTTTTGAAGCTCCTCTATCTTTTCTCAAGACATTGACTCATGCCATTCCTCACCAGAATTCCATTTTCTCCCAAGAAGATCTTCAGACAGATGTTCAAATCTTGGGTGCAAACATGTCGGCCCTTGGCCTATCTCAGAAACCCATTTACATTCATGCTTCTCGTGAGACATCTGATAGAAGTGGGGTTGAGGGTGGTTTTGACACCATTGAAACTGTTCCTGAGGCGATTCCGGTTGTGTTGACCAAACCTCCTATTGAAGATCAACTTGCATGGAATACGCTTTGGCCAGAATCACATAAACTATATGGTCATGGGAATGAGCTATTTTCTTTATGCTGTGACCATGATGGCAAGCTTGTAGCTTCATCTTGTAAAGCACAATCTATGGCAGTAGCTGAAATATGGCTTTGGCAAGTTGGTTCGTGGAAGGCAATAGGTAGACTGCCGTCTCACAGCTTAACAGTAACCCAAATGGAGTTCTCTCATGATGATGATTTACTTTTGGCTGTCTCTAGAGATCGCCACTTATCTGTTTTTAAGATCCAAAGAACAGGTGGGGATGAGATTAGTTATGAACTTCTATCAAGACAAGAGGCACACAAAAGAATTATATGGGCATGTTCTTGGAACCCATATGGACAGGAATTTGCAACCGGATCTAGGGACAAAACCGTAAAAATCTGGACCGTGACAAAAGAATCTTCAGTTAAGAACATTACCACATTGCCTCCATTCAACAGTAGCGTGACAGCCTTATCTTGGACTGGAATTGATCGTGCAAGAAATTTCGGGTTTCTAGCTGTTGGGATTGAAAATGGCCTGATTGAATTATGGAGTCTTTGTCCGAATAAAACGGTTGATAATGTAGATGCTGCTATGCTTATCCGGTTTGACCCGTTCATGTGTCATGTTACTACAGTCAACCGCTTGACTTGGAGGAAGAGCGACTATAGCGAAGATGGCGGGAAAGCTGAGCTGGCTTCTTGTGGAGCTGATCATTGTGTGAGATTGTTCGAGGTGAATATTATCAATTAA 2487 42.78 MSSSVEVKRVFVGAGCNRIVNNVSWGASDFVAFGAQNAVAIFCPKTAEILTTLPGHKASVNCTHWLPSTKFAFKANNLDRNYLLSGDAEGAIILWEFSLLERKWRHVLRLPESHKKGVTCITAIMVSENEAIFASTSSDGTVHIWDMAFPSANEGDPKLMFVESLFIGPKSMVALSLAELPGNTGHIVLAMGGLDNKIHLYCGKRSGKFVRACELKGHTDWIRSLDFSLPINDEAHSFLLVSSSQDRGIRIWKMALRDSQAEKEISLASYIEGPQLRAGSACYQISLESLLIGHEDWVYSVEWQPPFSSTTEGITTCYQPQSILSASMDKTMMIWQPERTSGIWMNVVSVGELSHCALGFYGGHWSPDGDSILAHGYGGSFHLWKNIGGNLGNWQPQKVPSGHFAAVTDISWARSGDYMLSVSHDQTTRIFTPWKNEFSLSGGCSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLTHAIPHQNSIFSQEDLQTDVQILGANMSALGLSQKPIYIHASRETSDRSGVEGGFDTIETVPEAIPVVLTKPPIEDQLAWNTLWPESHKLYGHGNELFSLCCDHDGKLVASSCKAQSMAVAEIWLWQVGSWKAIGRLPSHSLTVTQMEFSHDDDLLLAVSRDRHLSVFKIQRTGGDEISYELLSRQEAHKRIIWACSWNPYGQEFATGSRDKTVKIWTVTKESSVKNITTLPPFNSSVTALSWTGIDRARNFGFLAVGIENGLIELWSLCPNKTVDNVDAAMLIRFDPFMCHVTTVNRLTWRKSDYSEDGGKAELASCGADHCVRLFEVNIIN 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2061289 2065909 - Conep09aG0045500.1 Cone9ag0445 444608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0445 828 PANTHER ELONGATOR COMPLEX PROTEIN 2 8 825 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Cone9ag0445 828 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 676 824 IPR011047 -
Cone9ag0445 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 681 722 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 395 431 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 112 146 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 627 663 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 291 335 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 49 95 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 678 712 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Pfam WD domain, G-beta repeat 214 252 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Gene3D - 1 172 IPR015943 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 103 146 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 46 96 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 625 664 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 445 486 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 208 253 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 674 713 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 393 432 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 346 385 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 578 622 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 777 823 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 SMART WD40_4 284 336 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 681 714 - -
Cone9ag0445 828 Gene3D - 173 271 IPR015943 GO:0005515(InterPro)
Cone9ag0445 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 254 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 147 IPR001680 GO:0005515(InterPro)
Cone9ag0445 828 Gene3D - 573 827 IPR015943 GO:0005515(InterPro)
Cone9ag0445 828 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 718 IPR011047 -
Cone9ag0445 828 Gene3D - 275 394 IPR015943 GO:0005515(InterPro)
Cone9ag0445 828 Gene3D - 395 541 IPR015943 GO:0005515(InterPro)
Cone9ag0445 828 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Cone9ag0445 828 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Cone9ag0445 828 PRINTS G protein beta WD-40 repeat signature 700 714 IPR020472 -
Cone9ag0445 828 FunFam Elongator acetyltransferase complex subunit 2 355 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0445 K11374 - - vvi:100257715 1296.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0423 Cone-Chr6:2055320 Cone9ag0445 Cone-Chr9:2061289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30