Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0449 ATGCAGAACTCATTTGCCTCATCAGCAGCTTCAAAGCAGGCGGTTTTCTTCAATCAACAATATTTGCAATTTCGCAATCTCCTTTCTAATTTACTCCTCTTTGCTTGTGGTTTAACTTTTGGTATAATACTTTCCATCTCTTTCATAAGTAACTTCTCATTTAGTCTGAAACTCACCGGATTCTCAATCTCTGGTACTACTTCTTCATTGTCCCCAAATTATACTGCAACATCACCATTTTTTGAGCCAATTAATGGATCCTCCGATTTAACGGGTAGTATTAGCCGCCGTATAGGACTGACAGAGTATCTGGAACCGCCTTTAATGATTAAGCATGATATGGAAGAAGTGGAATTGCTTTGGAGAGCTTCAATGGCTCCGAAGATTCAAGAATATCCGTTTGAAAGAGTTCCAAAGGTTGCGTTTATGTTCTTGACAAGAGGACCTATTCTTTTTGCTGCCTTGTGGGAAAAATTCTTCAAGGGTTATGAAGGTTTATACTCGATCTATGTTCACTCCGATCCATCCTATAATGAGTCGGTACCGGAAAGTCCACTGTTTCATGGCAGAAGAATACCAAGCAAGGAAGTTGAGTGGGGAAAAGTAAACATGATTGAGGCAGAGAGGCGTCTTCTAGCCAATGCACTCCTCGATTTCTCAAACCAACGCTTTGTTCTCCTTTCAGAATCGTGCATTCCGCTCTTCAACTTCACCACAATTTACTCCTACCTTATTAACTCCACCCAAAGTTTCGTCATGTCCTATGAAGATTCCGGCCCGGATGGACTCGGTCGATACTACCCCGACATGTACCCTGAAATATCCATGCACCAATGGCGGAAAGGCTCCCAATGGTTTGAAATGGACCGAGATCTAGCCCTAGAAGTTGTATCGGACCAGAAATATTTCGGAGTTTTTCAGAGGGTTTGTCAACGAGTTGGCTACTGTTTTGCCGATGAGCATTACTTGCCCACATATGTGCCCATGAATTTTGGCGGGAGAAACTCCAATAGGAGTTTGACTTGGGTTGATTGGTCAAGGGGCGGGCCCCATCCAGTAACATTTTCTGGGTCAGAGGTGAGCGTTGAGGTTTTGACGAAGTTGAGAAACGGAAGCGTGCCGTGTCGGTATAACGGGCAGGGGACAAATATGTGTTTCTTGTTTGCTAGGAAGTTCTCTGTTAGTACTTTGGATGTGTTGCTCAGAATTGCACCTGAGGTCATGCATTTTTCAGATTAA 1239 43.34 MQNSFASSAASKQAVFFNQQYLQFRNLLSNLLLFACGLTFGIILSISFISNFSFSLKLTGFSISGTTSSLSPNYTATSPFFEPINGSSDLTGSISRRIGLTEYLEPPLMIKHDMEEVELLWRASMAPKIQEYPFERVPKVAFMFLTRGPILFAALWEKFFKGYEGLYSIYVHSDPSYNESVPESPLFHGRRIPSKEVEWGKVNMIEAERRLLANALLDFSNQRFVLLSESCIPLFNFTTIYSYLINSTQSFVMSYEDSGPDGLGRYYPDMYPEISMHQWRKGSQWFEMDRDLALEVVSDQKYFGVFQRVCQRVGYCFADEHYLPTYVPMNFGGRNSNRSLTWVDWSRGGPHPVTFSGSEVSVEVLTKLRNGSVPCRYNGQGTNMCFLFARKFSVSTLDVLLRIAPEVMHFSD 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2087084 2088985 - Conep09aG0045900.1 Cone9ag0449 444612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0449 412 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 54 406 IPR044174 GO:0016757(InterPro)
Cone9ag0449 412 Pfam Core-2/I-Branching enzyme 140 368 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0449 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0308 Cone-Chr13:2429995 Cone9ag0449 Cone-Chr9:2087084 5.26E-145 dispersed
Cone5ag1849 Cone-Chr5:12969247 Cone9ag0449 Cone-Chr9:2087084 1.82E-46 dispersed
Cone7ag1199 Cone-Chr7:8921086 Cone9ag0449 Cone-Chr9:2087084 6.40E-111 dispersed
Cone7ag1301 Cone-Chr7:9584238 Cone9ag0449 Cone-Chr9:2087084 2.71E-76 dispersed
Cone7ag1302 Cone-Chr7:9585698 Cone9ag0449 Cone-Chr9:2087084 4.81E-15 dispersed
Cone11ag0309 Cone-Chr11:1506430 Cone9ag0449 Cone-Chr9:2087084 1.02E-113 wgd
Cone13ag0813 Cone-Chr13:7461035 Cone9ag0449 Cone-Chr9:2087084 2.97E-69 wgd
Cone19ag0819 Cone-Chr19:6514639 Cone9ag0449 Cone-Chr9:2087084 2.47E-157 wgd
Cone6ag0431 Cone-Chr6:2091928 Cone9ag0449 Cone-Chr9:2087084 1.49E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020809 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 4