Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0476 ATGCGTGGGGCAGTGATGAGGATGGATTCCAGAGAATACGCGAAGGCTCTAGAAGATGAACGCAGGAAAATTCAGGTTTTCCAGCGCGAGCTGCCTCTCTGTTTCGAGCTTGTCACTCAAGCGATCGAGTCGTGCAGGCAGCAGTTGTCGGAGACGACGACGGAGGAGTTGAACGGAGTACAATCTGACTGCTCGGAACAACTTTCTCGCGAAGTTTCTCCTGTTTTGGAGGAATTCATTCCTGTGAAGAGGTCGGTTTCTTCGGATTCTGACGATGAAGAGCAACAATCTGCTCGTAAGATAAACAAGAGTACCGATGAGAAGATATTGGGTCAATCGGACTGGCTTCGATCTGCTCAGCTATGGAACCAAACGCCAAATCTACTCGATAAGCAGGATGGGCCTAAGAAAGGATCGGTTATGGAGGTGAAGAGGAATGGCGGTGCATTCCAGCCATTTCACAGAGAGAAAACTGTGGATGAAAAGAAAATAGAAGCGTCAGTGGTAGCTAAAGCTCCCTCCTCCGCTACCCCAACTGCCGAAACAGGTTCGGGATCAGGAGGCAGTGGCGGAAGCAGCAGAGGAGAAGGGAGAGAAGGATCGAGCCAGAGAAAACAGAGGCGGTGCTGGTCGCCGGAGTTGCATAGACGATTCTTGCACGCTCTTCAACAGCTTGGAGGTTCACAATGTGCTACTCCTAAACAGATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGATGAGGTCAAAAGCCATTTACAGAAATACCGATTGCACACCAGAAGGCCAAGCCATGTGATACATGGCAATAACAGCTGTAGCAGCAGCAGCCCAGCGGAAGCAGCACACTTAGTGGTGGTTGGGGGCATATGGGTGTCTCCGCCAGAATATGCAGCAGCTATGTCGGCGGTAACTGGGAAACCAGGCGATGTTGCTGCCACAAATGATGGAGGAGGAGGTGTCCATGCACCAGTGGCTTTACCACCACCCCAACAGCCACCTTGTTCTGTAATATGTTCTAATTCTAATCAATACGAGTCTGAAGAAAAGAGGGTGATTTGTATTAACCGTAGCGAAGGTGGAGCCAGTACTCTATCTTCCTCTTCCACACACACTTCTAATTAA 1128 49.73 MRGAVMRMDSREYAKALEDERRKIQVFQRELPLCFELVTQAIESCRQQLSETTTEELNGVQSDCSEQLSREVSPVLEEFIPVKRSVSSDSDDEEQQSARKINKSTDEKILGQSDWLRSAQLWNQTPNLLDKQDGPKKGSVMEVKRNGGAFQPFHREKTVDEKKIEASVVAKAPSSATPTAETGSGSGGSGGSSRGEGREGSSQRKQRRCWSPELHRRFLHALQQLGGSQCATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSHVIHGNNSCSSSSPAEAAHLVVVGGIWVSPPEYAAAMSAVTGKPGDVAATNDGGGGVHAPVALPPPQQPPCSVICSNSNQYESEEKRVICINRSEGGASTLSSSSTHTSN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2270650 2272349 - Conep09aG0048600.1 Cone9ag0476 444639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0476 375 MobiDBLite consensus disorder prediction 172 197 - -
Cone9ag0476 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677(InterPro)
Cone9ag0476 375 Coils Coil 10 30 - -
Cone9ag0476 375 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Cone9ag0476 375 MobiDBLite consensus disorder prediction 84 106 - -
Cone9ag0476 375 FunFam Myb family transcription factor 204 262 - -
Cone9ag0476 375 Gene3D - 204 262 - -
Cone9ag0476 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cone9ag0476 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0476 375 MobiDBLite consensus disorder prediction 161 209 - -
Cone9ag0476 375 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1128 Cone-Chr10:8117462 Cone9ag0476 Cone-Chr9:2270650 5.89E-39 dispersed
Cone6ag1376 Cone-Chr6:11048527 Cone9ag0476 Cone-Chr9:2270650 6.41E-27 dispersed
Cone8ag1154 Cone-Chr8:10046877 Cone9ag0476 Cone-Chr9:2270650 6.89E-43 dispersed
Cone8ag1407 Cone-Chr8:11047606 Cone9ag0476 Cone-Chr9:2270650 1.76E-09 dispersed
Cone13ag0852 Cone-Chr13:7621202 Cone9ag0476 Cone-Chr9:2270650 1.20E-97 wgd
Cone19ag0853 Cone-Chr19:6697499 Cone9ag0476 Cone-Chr9:2270650 2.74E-99 wgd
Cone6ag0464 Cone-Chr6:2290524 Cone9ag0476 Cone-Chr9:2270650 5.49E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46795 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0476 - - - 0.0