Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0476 ATGCGTGGGGCAGTGATGAGGATGGATTCCAGAGAATACGCGAAGGCTCTAGAAGATGAACGCAGGAAAATTCAGGTTTTCCAGCGCGAGCTGCCTCTCTGTTTCGAGCTTGTCACTCAAGCGATCGAGTCGTGCAGGCAGCAGTTGTCGGAGACGACGACGGAGGAGTTGAACGGAGTACAATCTGACTGCTCGGAACAACTTTCTCGCGAAGTTTCTCCTGTTTTGGAGGAATTCATTCCTGTGAAGAGGTCGGTTTCTTCGGATTCTGACGATGAAGAGCAACAATCTGCTCGTAAGATAAACAAGAGTACCGATGAGAAGATATTGGGTCAATCGGACTGGCTTCGATCTGCTCAGCTATGGAACCAAACGCCAAATCTACTCGATAAGCAGGATGGGCCTAAGAAAGGATCGGTTATGGAGGTGAAGAGGAATGGCGGTGCATTCCAGCCATTTCACAGAGAGAAAACTGTGGATGAAAAGAAAATAGAAGCGTCAGTGGTAGCTAAAGCTCCCTCCTCCGCTACCCCAACTGCCGAAACAGGTTCGGGATCAGGAGGCAGTGGCGGAAGCAGCAGAGGAGAAGGGAGAGAAGGATCGAGCCAGAGAAAACAGAGGCGGTGCTGGTCGCCGGAGTTGCATAGACGATTCTTGCACGCTCTTCAACAGCTTGGAGGTTCACAATGTGCTACTCCTAAACAGATCAGAGAGTTGATGAAGGTGGATGGTCTTACCAACGATGAGGTCAAAAGCCATTTACAGAAATACCGATTGCACACCAGAAGGCCAAGCCATGTGATACATGGCAATAACAGCTGTAGCAGCAGCAGCCCAGCGGAAGCAGCACACTTAGTGGTGGTTGGGGGCATATGGGTGTCTCCGCCAGAATATGCAGCAGCTATGTCGGCGGTAACTGGGAAACCAGGCGATGTTGCTGCCACAAATGATGGAGGAGGAGGTGTCCATGCACCAGTGGCTTTACCACCACCCCAACAGCCACCTTGTTCTGTAATATGTTCTAATTCTAATCAATACGAGTCTGAAGAAAAGAGGGTGATTTGTATTAACCGTAGCGAAGGTGGAGCCAGTACTCTATCTTCCTCTTCCACACACACTTCTAATTAA 1128 49.73 MRGAVMRMDSREYAKALEDERRKIQVFQRELPLCFELVTQAIESCRQQLSETTTEELNGVQSDCSEQLSREVSPVLEEFIPVKRSVSSDSDDEEQQSARKINKSTDEKILGQSDWLRSAQLWNQTPNLLDKQDGPKKGSVMEVKRNGGAFQPFHREKTVDEKKIEASVVAKAPSSATPTAETGSGSGGSGGSSRGEGREGSSQRKQRRCWSPELHRRFLHALQQLGGSQCATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSHVIHGNNSCSSSSPAEAAHLVVVGGIWVSPPEYAAAMSAVTGKPGDVAATNDGGGGVHAPVALPPPQQPPCSVICSNSNQYESEEKRVICINRSEGGASTLSSSSTHTSN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2270650 2272349 - Conep09aG0048600.1 Cone9ag0476 444639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0476 375 MobiDBLite consensus disorder prediction 172 197 - -
Cone9ag0476 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677(InterPro)
Cone9ag0476 375 Coils Coil 10 30 - -
Cone9ag0476 375 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Cone9ag0476 375 MobiDBLite consensus disorder prediction 84 106 - -
Cone9ag0476 375 FunFam Myb family transcription factor 204 262 - -
Cone9ag0476 375 Gene3D - 204 262 - -
Cone9ag0476 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cone9ag0476 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0476 375 MobiDBLite consensus disorder prediction 161 209 - -
Cone9ag0476 375 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0476 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1128 Cone-Chr10:8117462 Cone9ag0476 Cone-Chr9:2270650 5.89E-39 dispersed
Cone6ag1376 Cone-Chr6:11048527 Cone9ag0476 Cone-Chr9:2270650 6.41E-27 dispersed
Cone8ag1154 Cone-Chr8:10046877 Cone9ag0476 Cone-Chr9:2270650 6.89E-43 dispersed
Cone8ag1407 Cone-Chr8:11047606 Cone9ag0476 Cone-Chr9:2270650 1.76E-09 dispersed
Cone13ag0852 Cone-Chr13:7621202 Cone9ag0476 Cone-Chr9:2270650 1.20E-97 wgd
Cone19ag0853 Cone-Chr19:6697499 Cone9ag0476 Cone-Chr9:2270650 2.74E-99 wgd
Cone6ag0464 Cone-Chr6:2290524 Cone9ag0476 Cone-Chr9:2270650 5.49E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46795 None None None None Cone TF