Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0477 | ATGCAAACTAGTTCCTCCACACTCATATCATCAACAAGCGCCGATCAAAGTGCTTGTTTAGAACCAGACGAAGAAGGACAAGCTATAGACTCCAATTTCCTCTCTCTTTGCCCTCCTGTCCAACACATCAAAATTTTCAAACATCAATTCGTTAACCAACCTACACATCATCTCCCATATCATCACCTAAACCCTAGTCCTGACAATGACCACCACCATAATCAGCATACTCTTCATCAGGATGCAGGTGCAGTTACAGTTGCCCTCCACATCGGCCCTCCATCATCTACAGTTACCTCCATTACCACCACTACTACTACTTCCACCAATCCTAATACTGATCCCATCCCAGGCCAGTACTGGATCCCCTCTCCGGCCCAAATCCTCGTCGGCCCAACCCAGTTCTCTTGCTCCGTCTGCAACAAAACCTTCAATCGTTACAATAACATGCAGATGCATATGTGGGGGCATGGATCAGAGTACAGGAAAGGGCCAGAATCATTAAGAGGGACAAAGCCGAGTTCGTCGATGCTAAGGCTGCCATGTTATTGCTGTGCAGAGGGATGTAAGAACAACATAGAACATCCCAGAACGAAGCCGCTGAAGGATTTTAGGACGCTGCAGACGCATTACAAGAGAAAGCATGGCGCGAAGCCGTTTGGGTGCAAGAAATGCAGGAAGGAGTTTGCAGTGAGAGGGGATTGGAGGACCCACGAGAAGAATTGTGGGAAGGTCTGGTTTTGTATTTGTGGGTCCGATTTTAAGCACAAGAGGTCCTTGAAAGACCATGTTAGGGCTTTTGGCAATGGCCACGCGCCTCATACTGTTGACATCATACGTTGTACTACAACTGAGGTTGAAGAAGAAGAAGAGGAAGATCAAGAAGATTATGTTGGAGCTGGTCATGATCATGGGTTTGTTTACTATTGA | 930 | 46.77 | MQTSSSTLISSTSADQSACLEPDEEGQAIDSNFLSLCPPVQHIKIFKHQFVNQPTHHLPYHHLNPSPDNDHHHNQHTLHQDAGAVTVALHIGPPSSTVTSITTTTTTSTNPNTDPIPGQYWIPSPAQILVGPTQFSCSVCNKTFNRYNNMQMHMWGHGSEYRKGPESLRGTKPSSSMLRLPCYCCAEGCKNNIEHPRTKPLKDFRTLQTHYKRKHGAKPFGCKKCRKEFAVRGDWRTHEKNCGKVWFCICGSDFKHKRSLKDHVRAFGNGHAPHTVDIIRCTTTEVEEEEEEDQEDYVGAGHDHGFVYY | 309 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 2278423 | 2279452 | + | Conep09aG0048700.1 | Cone9ag0477 | 444640 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0477 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 109 | 156 | IPR036236 | - | |
| Cone9ag0477 | 309 | Gene3D | Classic Zinc Finger | 218 | 295 | - | - | |
| Cone9ag0477 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 202 | 240 | IPR036236 | - | |
| Cone9ag0477 | 309 | MobiDBLite | consensus disorder prediction | 95 | 114 | - | - | |
| Cone9ag0477 | 309 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 219 | 243 | - | - | |
| Cone9ag0477 | 309 | Gene3D | Classic Zinc Finger | 134 | 157 | - | - | |
| Cone9ag0477 | 309 | PANTHER | ZINC FINGER PROTEIN WIP2 | 30 | 294 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
| Cone9ag0477 | 309 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cone9ag0477 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 135 | 162 | IPR013087 | - | |
| Cone9ag0477 | 309 | FunFam | Zinc finger protein WIP2 | 189 | 271 | - | - | |
| Cone9ag0477 | 309 | Pfam | C2H2-type zinc finger | 135 | 154 | IPR013087 | - | |
| Cone9ag0477 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 137 | 157 | IPR013087 | - | |
| Cone9ag0477 | 309 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cone9ag0477 | 309 | SMART | c2h2final6 | 220 | 240 | IPR013087 | - | |
| Cone9ag0477 | 309 | SMART | c2h2final6 | 135 | 157 | IPR013087 | - | |
| Cone9ag0477 | 309 | SMART | c2h2final6 | 183 | 215 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag1271 | Cone-Chr7:9434418 | Cone9ag0477 | Cone-Chr9:2278423 | 2.43E-47 | dispersed | |
| Cone7ag1811 | Cone-Chr7:11826012 | Cone9ag0477 | Cone-Chr9:2278423 | 1.36E-18 | dispersed | |
| Cone6ag0465 | Cone-Chr6:2295739 | Cone9ag0477 | Cone-Chr9:2278423 | 3.38E-183 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46796 | PF01423 | LSM | 6.60E-09 | CL0527 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0477 | - | - | - | 0.0 |