Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0479 ATGGCGTTCGGTGCTTCTCTTTCTCAAGCAGCTCCCTCTTTGCAACTGTCAACTCCATTTCACAGCGAATCATCAGAGTCAACGCTTTTCAAGGGGACCTCGCTCACCTTCCCTTTCTCTTCTGGAAATCAATCGCATTTCAGTAAGCAGCTCGTTGTTCATGCTAAGAGAGTATCAGGTTTGGAAGAAGCCTTTAGAATTAAAAGAGAACGTGAGCTTCAAACGGGGAAGAAATTTAAATGGCCGCCACCACTAAGGCGTGGAAGGGTATCTCCTCGTCTTACTGTGCCTGATCATATACAGAAGCCCCCATATTTTGGTTCAAATATACTGCCCAAAATTGCAAGCGAATATCAAATACACGATTCAGAAGGGCTCGTTAAGATGAGAGCTGCTTGTGAGCTTGCAGCTCGTGTCTTAGAGTTTGCTGGAACACTTGTCAGGCCTTCTGTAACAACAAATGAGATCGACATAGCAGTGCACCAGATGATTGTTGATGCTGGTGCTTATCCTTCACCTCTTGGCTATGGCGGATTTCCAAAGAGTGTTTGTACCTCTGTTAATGAGTGCATGTGCCATGGAATTCCTGACTCTAGACAATTACAGAGTGGTGACATAATAAACATTGATGTCACAGTCTATTTAAATGGATATCATGGAGACACCTCGAAAATGTTTCTTTGTGGGGAGGTTGATGAAAAAACGAAACGTTTGGTAAAGGTAACAGAGGAGTGCTTGGAGAGAGGGATAGCTTTATGCAAGGGCGGTGCCATATTTAAGAAAATAGGAAAGAGGATAAGTGAGCATGCTGAAAAATATGGTCTTGGGGTGGTGGAGCGTTTTGTTGGGCATGGTGTGGGACGCGTCTTTCATTCCGAGCCTCTTATTTATCATCACCGCAATGAACAACCCGGTTGCATGGTGCAAGGTCAGACATTTACAATTGTGCAGAACCAATTCTTACTCTGGGAAGGATAG 978 44.27 MAFGASLSQAAPSLQLSTPFHSESSESTLFKGTSLTFPFSSGNQSHFSKQLVVHAKRVSGLEEAFRIKRERELQTGKKFKWPPPLRRGRVSPRLTVPDHIQKPPYFGSNILPKIASEYQIHDSEGLVKMRAACELAARVLEFAGTLVRPSVTTNEIDIAVHQMIVDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQSGDIINIDVTVYLNGYHGDTSKMFLCGEVDEKTKRLVKVTEECLERGIALCKGGAIFKKIGKRISEHAEKYGLGVVERFVGHGVGRVFHSEPLIYHHRNEQPGCMVQGQTFTIVQNQFLLWEG 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2287817 2290208 - Conep09aG0048900.1 Cone9ag0479 444642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0479 325 SUPERFAMILY Creatinase/aminopeptidase 79 315 IPR036005 -
Cone9ag0479 325 Pfam Metallopeptidase family M24 128 315 IPR000994 -
Cone9ag0479 325 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 281 299 IPR002467 GO:0006508(InterPro)|GO:0070006(InterPro)
Cone9ag0479 325 Gene3D Creatinase/methionine aminopeptidase superfamily 79 316 IPR036005 -
Cone9ag0479 325 NCBIfam methionine aminopeptidase, type I 120 315 IPR002467 GO:0006508(InterPro)|GO:0070006(InterPro)
Cone9ag0479 325 PANTHER METHIONINE AMINOPEPTIDASE 13 315 - GO:0009507(PANTHER)|GO:0070006(PANTHER)
Cone9ag0479 325 CDD MetAP1 128 315 IPR002467 GO:0006508(InterPro)|GO:0070006(InterPro)
Cone9ag0479 325 PRINTS Methionine aminopeptidase-1 signature 183 196 IPR001714 -
Cone9ag0479 325 PRINTS Methionine aminopeptidase-1 signature 205 221 IPR001714 -
Cone9ag0479 325 PRINTS Methionine aminopeptidase-1 signature 275 287 IPR001714 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0479 K01265 - - cit:102623462 473.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0120 Cone-Chr8:618134 Cone9ag0479 Cone-Chr9:2287817 1.24E-104 dispersed
Cone6ag0467 Cone-Chr6:2301071 Cone9ag0479 Cone-Chr9:2287817 3.04E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g267 . . . . . . Bma14g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0467 Cone9ag0479 . . . . . Blo11g00831 . . Bpe11g01691 . . . . . . . . . . . . Bhi12g01373 . . . . . Lcy10g0912 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002340 1 1 2 1 1 2 0 2 2 2 2 2 2 2 2 2 2 3 2 2 2 3 3 2 3 2 1 5 1 2 59