Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0480 ATGGATGGAAGTAGCAGGGACGAAAGCACATCTAGCGACTCCACCTCCCTATCTCCGACAACTCCATTACCCTTCCCTCCGGCCACAAACCTCTCGCCGCTGGCGAGTCTCTCCCGTCTAGGGAGCGGCGCCAGCGTTACCATAGACTCAGAAATCACCAGCGCCGCCTCACCCGGTGGTTGTACTGTACTTGATCAGGCCGAGTCACGTAAACTGCCGTCGTCGAAATACAAAGGCGTGGTCCCACAGCCAAACGGACGTTGGGGAGCTCAGATTTACGAGAAACACCAACGAGTCTGGCTCGGTACCTTCAACGAAGAAAACGAAGCTGCTAAAGCATACGATATTGCGGCTCAACGGTTCCGTGGACGCGACGCTATTACAAACTTCAAACCGCTCTCTGAGGCCATCCAAAACGACGACGTCGAAATGGCGTTTCTGAACTCTCATTCTAAATCGGAGATCGTCGATATGCTGCGTAAGCACACTTACGACGACGAGCTTCAGCAGAGCAAGCGTACGTACAGTCTGTTGAATAAGGACGGGAAGCGATTCAGATCTATCGGAAACAACGACGTTTTCTGCAGTACGTCCGAACGGAATTCCAAAACGCGCGAGCTGCTTTTTGAAAAATCAGTTACGCCGAGTGACGTCGGGAAGCTGAACCGTCTGGTGATCCCTAAACAACACGCGGAGAAGCATTTTCCGTTGCATACTAACGGCAACGGTAACGGCGGTGTAAACGGCGTTTCAGCGAAGGGTTTGTTGCTGAATTTTGAGGACGTGGGGGAGAAGGTATGGAGGTTTCGGTATTCGTATTGGAACAGTAGTCAAAGCTATGTGTTGACTAAAGGCTGGAGCCGGTTCGTGAAGGAGAAGAATCTGAAAGCCGGTGACGTGGTATGCTTTCTTAGATCGGCCGGACCGGACAAGCAGCTTTTTATCGATTGGAAGAAGAATAACGGGTCGGGTCATGTGGTTAGACCGGTGAATTCGGTTCAGGTGGTCAGACTATTTGGTGTCAACATTTTGAAAGCTCCGGCGAGTTCATGTGACAAAAAAAATCCCGGCTTGGACCTGTTGGGATTACAGTGTGGTAAAAAGCAGAGGATAATTGGAGCTTTGTAA 1128 50.71 MDGSSRDESTSSDSTSLSPTTPLPFPPATNLSPLASLSRLGSGASVTIDSEITSAASPGGCTVLDQAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAAKAYDIAAQRFRGRDAITNFKPLSEAIQNDDVEMAFLNSHSKSEIVDMLRKHTYDDELQQSKRTYSLLNKDGKRFRSIGNNDVFCSTSERNSKTRELLFEKSVTPSDVGKLNRLVIPKQHAEKHFPLHTNGNGNGGVNGVSAKGLLLNFEDVGEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVCFLRSAGPDKQLFIDWKKNNGSGHVVRPVNSVQVVRLFGVNILKAPASSCDKKNPGLDLLGLQCGKKQRIIGAL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2293951 2295406 - Conep09aG0049000.1 Cone9ag0480 444643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0480 375 SUPERFAMILY DNA-binding pseudobarrel domain 205 318 IPR015300 -
Cone9ag0480 375 CDD B3_DNA 208 303 IPR003340 GO:0003677(InterPro)
Cone9ag0480 375 Gene3D AP2/ERF domain 75 132 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0480 375 SMART B3_2 209 321 IPR003340 GO:0003677(InterPro)
Cone9ag0480 375 Gene3D - 196 326 IPR015300 -
Cone9ag0480 375 FunFam AP2 domain-containing protein RAP2.8 75 132 - -
Cone9ag0480 375 SMART rav1_2 76 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0480 375 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 343 IPR044800 GO:0003700(InterPro)
Cone9ag0480 375 SUPERFAMILY DNA-binding domain 75 131 IPR016177 GO:0003677(InterPro)
Cone9ag0480 375 CDD AP2 75 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0480 375 ProSiteProfiles AP2/ERF domain profile. 76 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0480 375 MobiDBLite consensus disorder prediction 1 32 - -
Cone9ag0480 375 Pfam B3 DNA binding domain 209 318 IPR003340 GO:0003677(InterPro)
Cone9ag0480 375 ProSiteProfiles B3 DNA-binding domain profile. 209 321 IPR003340 GO:0003677(InterPro)
Cone9ag0480 375 Pfam AP2 domain 75 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1137 Cone-Chr19:8128818 Cone9ag0480 Cone-Chr9:2293951 7.06E-38 dispersed
Cone1ag0418 Cone-Chr1:3672787 Cone9ag0480 Cone-Chr9:2293951 1.41E-55 dispersed
Cone5ag1280 Cone-Chr5:7047203 Cone9ag0480 Cone-Chr9:2293951 3.74E-53 dispersed
Cone9ag0480 Cone-Chr9:2293951 Cone10ag1119 Cone-Chr10:7992654 4.25E-12 dispersed
Cone13ag0853 Cone-Chr13:7632578 Cone9ag0480 Cone-Chr9:2293951 1.66E-146 wgd
Cone19ag0854 Cone-Chr19:6703569 Cone9ag0480 Cone-Chr9:2293951 2.22E-141 wgd
Cone6ag0468 Cone-Chr6:2305115 Cone9ag0480 Cone-Chr9:2293951 3.34E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46797 PF00013 KH_1 3.10E-11 CL0007 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0480 K09287 - vvi:100262843 442.58