Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0480 | ATGGATGGAAGTAGCAGGGACGAAAGCACATCTAGCGACTCCACCTCCCTATCTCCGACAACTCCATTACCCTTCCCTCCGGCCACAAACCTCTCGCCGCTGGCGAGTCTCTCCCGTCTAGGGAGCGGCGCCAGCGTTACCATAGACTCAGAAATCACCAGCGCCGCCTCACCCGGTGGTTGTACTGTACTTGATCAGGCCGAGTCACGTAAACTGCCGTCGTCGAAATACAAAGGCGTGGTCCCACAGCCAAACGGACGTTGGGGAGCTCAGATTTACGAGAAACACCAACGAGTCTGGCTCGGTACCTTCAACGAAGAAAACGAAGCTGCTAAAGCATACGATATTGCGGCTCAACGGTTCCGTGGACGCGACGCTATTACAAACTTCAAACCGCTCTCTGAGGCCATCCAAAACGACGACGTCGAAATGGCGTTTCTGAACTCTCATTCTAAATCGGAGATCGTCGATATGCTGCGTAAGCACACTTACGACGACGAGCTTCAGCAGAGCAAGCGTACGTACAGTCTGTTGAATAAGGACGGGAAGCGATTCAGATCTATCGGAAACAACGACGTTTTCTGCAGTACGTCCGAACGGAATTCCAAAACGCGCGAGCTGCTTTTTGAAAAATCAGTTACGCCGAGTGACGTCGGGAAGCTGAACCGTCTGGTGATCCCTAAACAACACGCGGAGAAGCATTTTCCGTTGCATACTAACGGCAACGGTAACGGCGGTGTAAACGGCGTTTCAGCGAAGGGTTTGTTGCTGAATTTTGAGGACGTGGGGGAGAAGGTATGGAGGTTTCGGTATTCGTATTGGAACAGTAGTCAAAGCTATGTGTTGACTAAAGGCTGGAGCCGGTTCGTGAAGGAGAAGAATCTGAAAGCCGGTGACGTGGTATGCTTTCTTAGATCGGCCGGACCGGACAAGCAGCTTTTTATCGATTGGAAGAAGAATAACGGGTCGGGTCATGTGGTTAGACCGGTGAATTCGGTTCAGGTGGTCAGACTATTTGGTGTCAACATTTTGAAAGCTCCGGCGAGTTCATGTGACAAAAAAAATCCCGGCTTGGACCTGTTGGGATTACAGTGTGGTAAAAAGCAGAGGATAATTGGAGCTTTGTAA | 1128 | 50.71 | MDGSSRDESTSSDSTSLSPTTPLPFPPATNLSPLASLSRLGSGASVTIDSEITSAASPGGCTVLDQAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENEAAKAYDIAAQRFRGRDAITNFKPLSEAIQNDDVEMAFLNSHSKSEIVDMLRKHTYDDELQQSKRTYSLLNKDGKRFRSIGNNDVFCSTSERNSKTRELLFEKSVTPSDVGKLNRLVIPKQHAEKHFPLHTNGNGNGGVNGVSAKGLLLNFEDVGEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVCFLRSAGPDKQLFIDWKKNNGSGHVVRPVNSVQVVRLFGVNILKAPASSCDKKNPGLDLLGLQCGKKQRIIGAL | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2293951 | 2295406 | - | Conep09aG0049000.1 | Cone9ag0480 | 444643 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0480 | 375 | SUPERFAMILY | DNA-binding pseudobarrel domain | 205 | 318 | IPR015300 | - | |
Cone9ag0480 | 375 | CDD | B3_DNA | 208 | 303 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0480 | 375 | Gene3D | AP2/ERF domain | 75 | 132 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag0480 | 375 | SMART | B3_2 | 209 | 321 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0480 | 375 | Gene3D | - | 196 | 326 | IPR015300 | - | |
Cone9ag0480 | 375 | FunFam | AP2 domain-containing protein RAP2.8 | 75 | 132 | - | - | |
Cone9ag0480 | 375 | SMART | rav1_2 | 76 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag0480 | 375 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 75 | 343 | IPR044800 | GO:0003700(InterPro) | |
Cone9ag0480 | 375 | SUPERFAMILY | DNA-binding domain | 75 | 131 | IPR016177 | GO:0003677(InterPro) | |
Cone9ag0480 | 375 | CDD | AP2 | 75 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag0480 | 375 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag0480 | 375 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cone9ag0480 | 375 | Pfam | B3 DNA binding domain | 209 | 318 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0480 | 375 | ProSiteProfiles | B3 DNA-binding domain profile. | 209 | 321 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0480 | 375 | Pfam | AP2 domain | 75 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag1137 | Cone-Chr19:8128818 | Cone9ag0480 | Cone-Chr9:2293951 | 7.06E-38 | dispersed | |
Cone1ag0418 | Cone-Chr1:3672787 | Cone9ag0480 | Cone-Chr9:2293951 | 1.41E-55 | dispersed | |
Cone5ag1280 | Cone-Chr5:7047203 | Cone9ag0480 | Cone-Chr9:2293951 | 3.74E-53 | dispersed | |
Cone9ag0480 | Cone-Chr9:2293951 | Cone10ag1119 | Cone-Chr10:7992654 | 4.25E-12 | dispersed | |
Cone13ag0853 | Cone-Chr13:7632578 | Cone9ag0480 | Cone-Chr9:2293951 | 1.66E-146 | wgd | |
Cone19ag0854 | Cone-Chr19:6703569 | Cone9ag0480 | Cone-Chr9:2293951 | 2.22E-141 | wgd | |
Cone6ag0468 | Cone-Chr6:2305115 | Cone9ag0480 | Cone-Chr9:2293951 | 3.34E-236 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46797 | PF00013 | KH_1 | 3.10E-11 | CL0007 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0480 | K09287 | - | vvi:100262843 | 442.58 |