Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0482 ATGATTCTTCACTTCACTCTCCTCCTCCTCTTTCTCTCTTTCCTCCTCTCCACCTCCGACCACCACTTCCCTTTCGGCATTTCTTATCACATAGACAGTGGAGGTCCAACAGAATCTACCGATCAATTCAACACTGTCTGGCTCTCCGACCGGTACTTCACCGGCGGCGCCAATGCCATAGTTTCGGAGCCACTACTCTTCCGTCATCAGCAAGAGAAAAACCTCAGATTCTTCCCTCTCTCTTCCGGCAAGAAGAATTGCTATATCATCCCTAACCTTCCTAACGGCCGTTACTACTTCCGTTCATTCACCGTCTACGACAACTACGACGGTAAGTCTCATCCTCCTTCCTTCGACGCCTCCGTCGAAGGCACTCTCGTTTTCAGCTGGAGATCTCCTTGGCCTGAAGACCTCGCTCGCCATGGCGCCTATTCCGATCTCTTCGCTTTCGTCAAAGACGGTCAGGCCGATTTCTGTTTCTACAGCATCGCCACTGATCCTCCTGTCATCGGATCTCTCCAGATTGTCCAGGTTGATCCCAAATCCTACGATTCGACCTCCATTGGCGATAATTTCATTCTTGTTAACTACGGAAGGCTCAGTTCCGGTTCAGGACAATGGGGCCCTGGATTCAGCAACGATACTGACTATTTCGGAAGGTCCTGGCAATCTGATTACCCTTTTCGATCTGCAAATTCCAGAAAATTGGTTGATGGTATGTCTACTAGGAACTCTATAAGAGGGACTGTTCAAGAGCCAAACTATTTTCCGATGAAATTGTACCAAACGGCCTTGACTGTGGGAGGAAATGGTGAATTGGAGTATGAATTGCCTGTAGATGCGAAGTTGGATTACTTGGTGTGGCTGCATTTTGCAGAGATCGATTTGGGCGTGAAGAAGGCTGGGCAGAGAGTGTTTGATGTTGTAATCAATGGCAAGAATGTGACGAGGATTGATATTTACAAGCAGGTTGGGAGCTTTGCGGCTTATTCATGGTCTCATACGGTGAAGAATTTGAGCAGCCCTGTGTTGAGTGTAAAGCTTGTGAAGGTGGTGGGTGCGCCTGTAATCAGTGGGCTGGAGAACTATGCTCTGGTTCCAGCTGATCTTGCAACTGTACCTGAACAAGTAATTGCTATGAGAGCATTGAAAGAATCACTGCATGTTCCTGATAGAATGGGCTGGAATGGCGATCCTTGTGCTCCTACTAAATGGGATGCATGGGAGGGAGTCACATGTCACCCGAACAAGAATGGAACAGCTCTTGTGATTTATCAAATAGATCTTGGAAGTCAAGGTTTGAAAGGGTTTATTACTGACCAGATTAGTCATTTGACAAACCTCGCAAGCTTGAACCTCAGCTCCAACTCTTTGGAAGGTGCATTACCACTTGGACTAGGTCAAAAAACCCTCATACAACTGGATTTGTCAAATAATCAATTGTCAGGGCCCATACCAGATAGTTTAGCTTCTTCAAATCTGCAGCTCGTACTATTGAATGATAACTTATTGGAAGGACGGGTGCCTGAGGAGCTCTATTCTATTGGCGTGCATGGTGGAGCTTTCGACCTCTCTGGTAACAAGGGTTTATGTGGTGTTCCATCCCTGCCAAAATGCCCAATATTTTGGAAAAACGACCGGTTATCTTCTGCGGGTAAAATTGCAATAGGGTTATCAGCTCTAGTGGTTATGTGTGTGTTACTTTTGGGAATATACCTTTTCTGCATCAGAAGAAGAAGAAATGAGTATGATTTCACTCTACCTCAGGATCTAATGTCTCTTTCAGCAAAAAGAAACAGATACCATAGGCAGAAATCTTTGATGCTTCTTGAAATGGAGAGTCAACATGCCAAAGGATTATTGCCTTTCACTCCACTCAAATGA 1884 45.65 MILHFTLLLLFLSFLLSTSDHHFPFGISYHIDSGGPTESTDQFNTVWLSDRYFTGGANAIVSEPLLFRHQQEKNLRFFPLSSGKKNCYIIPNLPNGRYYFRSFTVYDNYDGKSHPPSFDASVEGTLVFSWRSPWPEDLARHGAYSDLFAFVKDGQADFCFYSIATDPPVIGSLQIVQVDPKSYDSTSIGDNFILVNYGRLSSGSGQWGPGFSNDTDYFGRSWQSDYPFRSANSRKLVDGMSTRNSIRGTVQEPNYFPMKLYQTALTVGGNGELEYELPVDAKLDYLVWLHFAEIDLGVKKAGQRVFDVVINGKNVTRIDIYKQVGSFAAYSWSHTVKNLSSPVLSVKLVKVVGAPVISGLENYALVPADLATVPEQVIAMRALKESLHVPDRMGWNGDPCAPTKWDAWEGVTCHPNKNGTALVIYQIDLGSQGLKGFITDQISHLTNLASLNLSSNSLEGALPLGLGQKTLIQLDLSNNQLSGPIPDSLASSNLQLVLLNDNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGVPSLPKCPIFWKNDRLSSAGKIAIGLSALVVMCVLLLGIYLFCIRRRRNEYDFTLPQDLMSLSAKRNRYHRQKSLMLLEMESQHAKGLLPFTPLK 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2300771 2305328 - Conep09aG0049200.1 Cone9ag0482 444645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0482 627 Gene3D Ribonuclease Inhibitor 376 541 IPR032675 -
Cone9ag0482 627 Pfam Malectin-like domain 31 364 IPR024788 -
Cone9ag0482 627 Pfam Leucine Rich Repeat 471 490 IPR001611 GO:0005515(InterPro)
Cone9ag0482 627 Pfam Leucine Rich Repeat 447 467 IPR001611 GO:0005515(InterPro)
Cone9ag0482 627 PANTHER OS07G0107800 PROTEIN-RELATED 29 595 - -
Cone9ag0482 627 FunFam Di-glucose binding protein with Leucine-rich repeat domain 199 363 - -
Cone9ag0482 627 FunFam Putative LRR receptor-like serine/threonine-protein kinase 374 540 - -
Cone9ag0482 627 Gene3D - 208 364 - -
Cone9ag0482 627 SUPERFAMILY L domain-like 374 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0482 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0482 Cone-Chr9:2300771 Cone20ag0752 Cone-Chr20:5246327 1.73E-27 dispersed
Cone13ag0854 Cone-Chr13:7638713 Cone9ag0482 Cone-Chr9:2300771 4.34E-307 wgd
Cone6ag0469 Cone-Chr6:2312667 Cone9ag0482 Cone-Chr9:2300771 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g265 Blo01g00486 . Bda01g02093 . . . . . . . . . . . . . Cpe01g01765 . . . . . . . . . . . . . . Cone13ag0854 . Cone6ag0469 Cone9ag0482 . . . . . . . . . Bpe02g02283 Bma01g00156 . . . . Cma04g02011 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008532 1 1 2 1 1 1 2 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 34