Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0484 ATGCGGTTTGTTGAACATCATGGTTGGTTGGTAGCAGGCGAATTGGCGATCGCTACAAAAATCAAGTGTGCATCTGGAACGGAAGACCCGAATCGAGTCGAATGGAAAAGCAACCCAACTAGAGCTTGTCCTAATTGCAACCATCTAATTGATAACACTGATGTTGCTCAAGAGTGGCCAGGACTACCCAGAGGCGTAAAATTCTCCCCTTCTGATCAAGAAATCATATGGCATTTACTCGCGAAATCCGGTGTCAAAAATAATCTCGAACCCCATCCTTTTATTGACGAGTTTATCCCAACAGTCGAAAAAGAAGACGGCATATGTTACACTCATCCTCAGAACCTACCAGCAGTCAAGGCTTACAAAACTGGAACCCGGAAACGGAGAAAAATAAACAACGAAGATTTCAGTGGTGATGTTAGATGGCACAAAACGGGCCGCACCAAAGCGGTTTTATTAGATGGTAAAACTCAGAAAGGGTGTAAGAAGATAATGGTTCCTTATTCAAGCTCGGCTAGAGGAAGTAAACTTGAGAAAACCAAAATGCATCAATATCACTTAGGAACAGAGGAGGATGAGAAAGATGGAGATGTAAATGAAGAAGCCGTAGCTGTAAGAGTCAATCCAGTTACTCCAGAACCTCCAAGGATGGGAAAGAGATGCGCAGAAGATACTGATATGGTTAAGGATTCCAATGCTTTTGAAAAGCTTCTAGAAGGCCTGTCGCTTTGTGCTGATCTTCTTCAAGGCCAGACTTCTCCAAATAGGGAGGTTGGGAATGAAAACAGTGGAGTGGCTATTGATGGTACTAAAGGGAAAGCTTGTCTTTCGTATTATACTAGTTTGGGACCAGAGGAGTTGAAGAAAGATCTAGAAGAATGCGGGAATCTTGCTCTTGATCCTGCTACCATAGAACTTGATACCCCTCCGGATTTTCGACTTAGCCAGCTTGAATTTGGATCGCAAGATAGTTTTTTAGCATGGAGTGGCGAGGCGGTCTGGTTATAA 1011 43.32 MRFVEHHGWLVAGELAIATKIKCASGTEDPNRVEWKSNPTRACPNCNHLIDNTDVAQEWPGLPRGVKFSPSDQEIIWHLLAKSGVKNNLEPHPFIDEFIPTVEKEDGICYTHPQNLPAVKAYKTGTRKRRKINNEDFSGDVRWHKTGRTKAVLLDGKTQKGCKKIMVPYSSSARGSKLEKTKMHQYHLGTEEDEKDGDVNEEAVAVRVNPVTPEPPRMGKRCAEDTDMVKDSNAFEKLLEGLSLCADLLQGQTSPNREVGNENSGVAIDGTKGKACLSYYTSLGPEELKKDLEECGNLALDPATIELDTPPDFRLSQLEFGSQDSFLAWSGEAVWL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2312576 2314203 - Conep09aG0049400.1 Cone9ag0484 444647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0484 336 Gene3D NAC domain 71 212 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0484 336 ProSiteProfiles NAC domain profile. 62 211 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0484 336 Pfam No apical meristem (NAM) protein 63 188 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0484 336 SUPERFAMILY NAC domain 47 208 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0484 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 16 328 IPR044799 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0484 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0484 Cone-Chr9:2312576 Cone9ag0991 Cone-Chr9:5093527 1.34E-47 dispersed
Cone13ag0857 Cone-Chr13:7654533 Cone9ag0484 Cone-Chr9:2312576 2.15E-126 wgd
Cone19ag0857 Cone-Chr19:6724818 Cone9ag0484 Cone-Chr9:2312576 3.64E-127 wgd
Cone6ag0471 Cone-Chr6:2323680 Cone9ag0484 Cone-Chr9:2312576 6.72E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g260 . Blo16g01052 . . Bpe13g01330 . . . . Cmo18g01062 . Cma18g01044 . Car18g00969 Sed06g1864 Cpe09g00274 . Bhi07g01372 Tan04g0899 Cmetu10g1098 Lac13g0457 Hepe01g1222 . . Cla05g02330 Cam05g2504 Cec05g2527 Cco05g2570 Clacu05g2498 Cmu05g2360 Cre05g2476 Cone13ag0857 Cone19ag0857 Cone6ag0471 Cone9ag0484 Lsi04g00290 Csa05g02579 Chy10g01115 Cme10g00292 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004444 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 2 1 2 2 5 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46798 PF00733 Asn_synthase 3.80E-32 CL0039 Cone TF