Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0487 ATGAGCTGGAGGAGGGTGGGGAAGTCCCTTCAGGTTCTAGCAGCTCATGGCTTGCTCTTCTTCTTCTCGCTTCTGCTTGCACTGAAGCTCGACCATGCCCTTCACCGTTCATGGTGGACAATATTTTCCATCCTATGGCTTTTCCATGTGGTCATAGCTCGAGGGAGATTTTCCCTTCCGGCTCCGTCTATGCCTTGTAATCGACATTGGGCACCGTGGCACGCTGTCGTGGCAATACCATTGCTTGTTGCTTTCGAACTTCTTCTTTGCATTTATCTAGAGATCACTGATGTTATTAACTTGAAGATTGTTTTTCTTCCTCTGCTCATTTTTGAGATTGCAATTTTGATTGATAATATCAGGATGAGTAGATCTTTAATGCCCAGAGAAGATGAAACCATGAGTGATGACCATTTCTGGGTTGCAATTTCTATGGTTTTCTTCATAGCAGCCACCATGTTCACTCTCCTTAAGCTATGTGGTAATGTAACTGCTCTAGGCTGGTGGGACCTATTTATAAACTTCGGGATTGCAGAGTGCTTTGCCTTCCTTGTATGCACAAAGTGGTCTAACCCATCAATTCATCACCATTCTCTCATTGGAGACTCAAGCTCATCATCAGTGACTATTAGATATCTCGAATCTAATCAAGGCTTGGTAGTTTCCTCTAGTGAAGATCATTCTTCGAGTCAAATGTGCAACTTGCAAGACATAGGCGGACATTTCATGAAAATCCCGGTCATCATTTTCCAAATATTGGTTTTCATGCGATTAGAGGGAACGCCAGAGAGTGCTAGACTTATACCGTGGATGGTACTCTTTAGTCCACTTTTCTTATTGCAAGGAATCGGGGTGTTGTATGCTACCTATAGATTAGTCGAGAGGATTGTTCTTTTACTATTATTATCAACACGAGCTGATTCCGGAAGATACTTTGGAATCACTTCTAAGCCTCGTGAACTTTTAGGATTCTTACACCGTGGATCAAGGTTGCTGGGTTGGTGGTCTATTGACGAGGGAAGTAGAGAAGAACAAGCTAAACTTTACTGTGCTAAACAATCCGGATACAACACTTTCTCGCCAGATGTAGTCAAGAAAATGCCTAAAGCTAGTCTTGTTGAGGAGGTTTGGAAACTACAGGCGGCACTCAGGGAGCAAACGGAAATAACTAAGTTTAGACAGCACGTGTACGATCGACTTCAGAATGAAAAGGTTCTATGTAGAATCTGCTTCGATGAACAGATCAACATCGTTCTCCTTCCGTGCCGGCATCATATTCTTTGCAGCACTTGCTGTGAGAAGTGTAAGAGGTGCCCCATTTGCCGGGCGCCCATTGAGGAACGCCTGCCTGTATATCATGTCTAG 1365 43.74 MSWRRVGKSLQVLAAHGLLFFFSLLLALKLDHALHRSWWTIFSILWLFHVVIARGRFSLPAPSMPCNRHWAPWHAVVAIPLLVAFELLLCIYLEITDVINLKIVFLPLLIFEIAILIDNIRMSRSLMPREDETMSDDHFWVAISMVFFIAATMFTLLKLCGNVTALGWWDLFINFGIAECFAFLVCTKWSNPSIHHHSLIGDSSSSSVTIRYLESNQGLVVSSSEDHSSSQMCNLQDIGGHFMKIPVIIFQILVFMRLEGTPESARLIPWMVLFSPLFLLQGIGVLYATYRLVERIVLLLLLSTRADSGRYFGITSKPRELLGFLHRGSRLLGWWSIDEGSREEQAKLYCAKQSGYNTFSPDVVKKMPKASLVEEVWKLQAALREQTEITKFRQHVYDRLQNEKVLCRICFDEQINIVLLPCRHHILCSTCCEKCKRCPICRAPIEERLPVYHV 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2322803 2326146 - Conep09aG0049700.1 Cone9ag0487 444650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0487 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 453 IPR013083 -
Cone9ag0487 454 ProSiteProfiles Zinc finger RING-type profile. 407 442 IPR001841 -
Cone9ag0487 454 SUPERFAMILY RING/U-box 395 448 - -
Cone9ag0487 454 Pfam Transmembrane Fragile-X-F protein 28 280 IPR019396 -
Cone9ag0487 454 Pfam Zinc finger, C3HC4 type (RING finger) 404 447 - -
Cone9ag0487 454 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0262 Cone-Chr19:1760402 Cone9ag0487 Cone-Chr9:2322803 6.76E-218 transposed
Cone6ag0474 Cone-Chr6:2335120 Cone9ag0487 Cone-Chr9:2322803 1.43E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0487 - - - 0.0