Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0488 ATGAAGGAAGAAAGAGTGGATCAATTAGGAGAGTATTCAAAATCGATTATTGATCATCATCAAAACATAGAACAAGGGTTTGAAGAACAACAGCAGCAAGAGCTATTTATTCAACAAGAGATCATCAATATGCAGCAACACCAACAAAACACTACTACTAACAGTCATGATCATAGTATATATGGACGTGGTGGAAGAGGGTTCATTAACTTCCCTCATGAAGGTGGATTTTCACCAATTTTACAACCATGGAGTAGTGCCAGCACTAGTCATCCGGCCCATTTTGCAGTCAACCCGGTTCGAGACCAAGTTCATCATCACGACCCATTTCTGATCCCTCCTCCTCCTCCCCCAGTTTCATCCTCATCCTATGCTTCTTTCTTCAACCGATCAAGAGCTCCTTCTCTTCAATTTGCATTCGATCATCATCATCCATCTCCAGACCAACTCAGAATCTTGTCAAGCACCCTTGGACAGGTGGTTCAACCCGGTTCAGCTCCTTTCGGTCTCCAAGCCGAGCTTGGAAAGTTGACGGCTCAAGAAGTCATGGATGCTAAGGCCCTCGCCGCTTCTAAATCCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGTTGCGCAGCCTACTGCCCAGCACCACTAAAACAGACAAGGCTTCATTACTTGCCGAGGTGATACAACACGTGAAGGAGCTGAAACGACAAACTTCATTAATAGCCGAAACAAGTCCGATCCCAACCGAGATAGATGAGCTAACGGTGGATGCATCGGACGATGAGGAATCGGGCAAGTTTGTGATCAAAGCCTCGCTTTGTTGCGATGATAGGTCCGATCTTCTGCCTGATCTTATCAAAACCCTAAAGGGGTTACATCTTAAAACACTCAAGGCCGAGATTACAACACTCGGAGGACGCGTCAAAAATGTCCTGTTCATAACCGGCGATAATCAAGAAGAATCGACTAGTACTAGTCCGAATAACTGTGACCAACGACAACTGCAATATTGTATCAGTTCGATACAGGAGGCACTTAAGGCGGTTATGGAGAAGACGAGCGGGGACCACGATTCGTCTGCCGCAAGCGCTAAGAGACAAAGGACTAATAACAATTTGAATATCCTATAA 1143 45.06 MKEERVDQLGEYSKSIIDHHQNIEQGFEEQQQQELFIQQEIINMQQHQQNTTTNSHDHSIYGRGGRGFINFPHEGGFSPILQPWSSASTSHPAHFAVNPVRDQVHHHDPFLIPPPPPPVSSSSYASFFNRSRAPSLQFAFDHHHPSPDQLRILSSTLGQVVQPGSAPFGLQAELGKLTAQEVMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEIDELTVDASDDEESGKFVIKASLCCDDRSDLLPDLIKTLKGLHLKTLKAEITTLGGRVKNVLFITGDNQEESTSTSPNNCDQRQLQYCISSIQEALKAVMEKTSGDHDSSAASAKRQRTNNNLNIL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2328217 2330621 - Conep09aG0049800.1 Cone9ag0488 444651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0488 380 MobiDBLite consensus disorder prediction 356 380 - -
Cone9ag0488 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 245 IPR036638 GO:0046983(InterPro)
Cone9ag0488 380 FunFam transcription factor bHLH30 184 247 - -
Cone9ag0488 380 SMART finulus 195 244 IPR011598 GO:0046983(InterPro)
Cone9ag0488 380 PANTHER TRANSCRIPTION FACTOR BHLH30 160 374 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0488 380 Gene3D - 184 245 IPR036638 GO:0046983(InterPro)
Cone9ag0488 380 CDD bHLH_AtAIG1_like 184 262 - -
Cone9ag0488 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983(InterPro)
Cone9ag0488 380 Pfam Helix-loop-helix DNA-binding domain 192 239 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0634 Cone-Chr19:5476327 Cone9ag0488 Cone-Chr9:2328217 7.75E-48 dispersed
Cone6ag0966 Cone-Chr6:5146435 Cone9ag0488 Cone-Chr9:2328217 2.61E-36 dispersed
Cone9ag0488 Cone-Chr9:2328217 Cone9ag0972 Cone-Chr9:4909296 2.61E-34 dispersed
Cone1ag1660 Cone-Chr1:57789563 Cone9ag0488 Cone-Chr9:2328217 1.74E-32 transposed
Cone6ag0475 Cone-Chr6:2343077 Cone9ag0488 Cone-Chr9:2328217 1.04E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46799 PF12579 DUF3755 3.20E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0488 - - - 0.0