Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0499 ATGGCAACCATATCACCATCAGCAAATTCACCACCTTCTAACTCTTCTTCAGAGCAACCCACAACTTCACCACCGTCCAATTCCAACCGACCACCACCACCACCAGAACCATCCACCTCTGCTCCACCACCTTCGAATCCCAACCCACCACCACCACCACTGTCAACGTCTCATCCACCACCCCAACCTCCTTCAGATTCTCCAACAACTACTTCTCCACCTTCTCAGTCAACAGATCCACCTCCCCCCACCCCCACCACCCCATCAACCATATCTTCACCGCCACCTCCTCCTCCTTCTTCCGCTCCACCACCATTGGCATCACCGAACATATCACCTCCACCTCCGCCCGATTCCGTCTCACCTTCTCCCCCTCCACCACCTTCTTCCACCGCTACCCCACTTCCTCCTTCTTCAACCTCTAATCCTCCTCCACCACCACCACCACCACCACCACCATCAAATCCACCCGAGACTTCACCACCACCACCATCAAATCCCCCCGAGATTTCACTATCACCTCCACCACAATCAAAGCCTCCTGAGAATTCACCACCACCACCACCATCTCCACAATCAAAGCCTCCCGATAGTTCACCACCACCGCCTCCTCCATCAGGTCCACCTGAGAGTTCACCTCGACCACCACTGCAATCAGAGCCTCCCGAGACTTCACCACCACCACTGCCCCAATCATCAAAACCTCCCGAAACTTCATCATCATCACCACCACCACCACCTCCCGACGCTAGAGCACCTGGGAATTCAACCCCACCACCTGAAAAACCACCTTCACCACCTCAATCAAACCCTCCAAAAAATTCACCTTCTCCCCCACAACCAGCATCAGAACCTCCGACCAGCAGTGCGCCTCCCCCTTCTAAGCTCACTCCCATTTCACCTTCAATCTCAACCTCAAAGGCTCCTCCCCCACCACCTCCATTGTCCTCTCAATCAAACAATGGAACTAGAAATACTTCCACTCCTACTGCACCAGAAACATCCAACCCCACATCTAATAATACTAATGGAGGAGGAGGAGGAGGAGGAGGAGGTATTGGTCTTGGAGGCATGGTTGCTATTGCTGTCGTGTCTGGAATGATACTGCTCGGCCTTTTCGGATTGGCCGCTTGGTGTATTAGAAAGCAAAAGAAAAGGCCCGGAGTTGGTGTTTACGTAATGCCATCCCCTCTTGGCTCCTCACCTAGATCAGATTCATACCTTATAAAGGTGAATTCCTCAGCCCCAATAGGAAGTGAATCTGCCCGCGAATTTTCAGTTTCTCCCCCTGATCCTTCTACATTAGGTCATTCAAGGTCGTTGTTTACATATGAAGAACTAGCTAAGGCAACGGACGGGTTTTCGGCTCAGAATCTATTAGGTGAAGGTGGGTTTGGTTCGGTATATAAAGGATTTCTACCTGATGAGAGAGAAGTGGCAGTGAAGGAACTGAAAATCGGAGGAGGTCAGGGCGAGAGAGAATTCAAAGCTGAAGTTGAGACTATTAGCCGGATACATCATCGCCATTTGGTTTCATTAGTTGGTTATTGCATATCGGAGAATAGGAGGCTTCTTGTCTATGACTATGTCCCTAACAATAATCTTTATTATCATATTCACGAGGAGGGTAAGCCAGCTCTTGATTGGGCAAAACGGGTAAAAATTGCATCTGGCGCTGCTCGGGGCATAGCTTATCTACATGAAGATTGCAATCCTCAAATTATTCACAGGGATATCAAATCATCAAACATTCTTTTGAACAACAATTTTGAAGCTCTGGTTTCAGATTTTGGGCTTGCAAAATTAGCTCTGGGTGCTAATACACATATAACTACACGGGTTATGGGTACATTCGGATATGTGGCTCCTGAGTATGCTTCAAGTGGGAAATTGACTGAGAAATCAGATGTCTACTCTTTTGGAGTTGTACTTCTAGAGCTAATTACCGGACGGAAGCCAGTAGATAGATCTCAGCCTGTAGGAGATGAAAGTCTAGTTGAATGGGCTCGACCATTGCTTAGTCATGCACTTGAAACCAAGCAATTTCAAGAATTGGCAGATCCAAGACTCGAGAGAAACTATGCCGAGACGGAAATGTTCAAAATGATCGAGATTGCCGCTGCTTGTGTGAGGCATTCAGCCGCTAAGAGGCCTCGAATGGGACAGGTTGTTAGAGCTTTTGACAGTTTTGATACGTTGGATCTTACAAACAGATTGGCAGTAGGGGAAAGTAAGACCTTCGATACAGCAGAGCAATCTGCCGAGATTAGGCTTTTCCGGAGAATGGCTTTCGGTAGCCAACCTTATAGTACAGATTACTTTAGCCAAGATTATAGTACAGCTTAA 2346 48.17 MATISPSANSPPSNSSSEQPTTSPPSNSNRPPPPPEPSTSAPPPSNPNPPPPPLSTSHPPPQPPSDSPTTTSPPSQSTDPPPPTPTTPSTISSPPPPPPSSAPPPLASPNISPPPPPDSVSPSPPPPPSSTATPLPPSSTSNPPPPPPPPPPPSNPPETSPPPPSNPPEISLSPPPQSKPPENSPPPPPSPQSKPPDSSPPPPPPSGPPESSPRPPLQSEPPETSPPPLPQSSKPPETSSSSPPPPPPDARAPGNSTPPPEKPPSPPQSNPPKNSPSPPQPASEPPTSSAPPPSKLTPISPSISTSKAPPPPPPLSSQSNNGTRNTSTPTAPETSNPTSNNTNGGGGGGGGGIGLGGMVAIAVVSGMILLGLFGLAAWCIRKQKKRPGVGVYVMPSPLGSSPRSDSYLIKVNSSAPIGSESAREFSVSPPDPSTLGHSRSLFTYEELAKATDGFSAQNLLGEGGFGSVYKGFLPDEREVAVKELKIGGGQGEREFKAEVETISRIHHRHLVSLVGYCISENRRLLVYDYVPNNNLYYHIHEEGKPALDWAKRVKIASGAARGIAYLHEDCNPQIIHRDIKSSNILLNNNFEALVSDFGLAKLALGANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDRSQPVGDESLVEWARPLLSHALETKQFQELADPRLERNYAETEMFKMIEIAAACVRHSAAKRPRMGQVVRAFDSFDTLDLTNRLAVGESKTFDTAEQSAEIRLFRRMAFGSQPYSTDYFSQDYSTA 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2387964 2391727 - Conep09aG0050900.1 Cone9ag0499 444662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0499 781 Gene3D Phosphorylase Kinase; domain 1 422 529 - -
Cone9ag0499 781 SUPERFAMILY Protein kinase-like (PK-like) 430 725 IPR011009 -
Cone9ag0499 781 SMART serkin_6 454 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0499 781 MobiDBLite consensus disorder prediction 1 24 - -
Cone9ag0499 781 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 314 762 IPR047117 -
Cone9ag0499 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0499 781 Pfam Protein tyrosine and serine/threonine kinase 457 726 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0499 781 FunFam proline-rich receptor-like protein kinase PERK8 530 741 - -
Cone9ag0499 781 ProSiteProfiles Protein kinase domain profile. 454 731 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0499 781 MobiDBLite consensus disorder prediction 1 347 - -
Cone9ag0499 781 MobiDBLite consensus disorder prediction 25 317 - -
Cone9ag0499 781 CDD STKc_IRAK 460 725 - -
Cone9ag0499 781 ProSitePatterns Protein kinases ATP-binding region signature. 460 482 IPR017441 GO:0005524(InterPro)
Cone9ag0499 781 FunFam Proline-rich receptor-like protein kinase PERK8 426 529 - -
Cone9ag0499 781 Gene3D Transferase(Phosphotransferase) domain 1 530 743 - -
Cone9ag0499 781 MobiDBLite consensus disorder prediction 318 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0598 Cone-Chr16:7757238 Cone9ag0499 Cone-Chr9:2387964 8.61E-181 dispersed
Cone2ag0408 Cone-Chr2:2164959 Cone9ag0499 Cone-Chr9:2387964 7.05E-180 dispersed
Cone8ag0663 Cone-Chr8:6652064 Cone9ag0499 Cone-Chr9:2387964 1.85E-157 dispersed
Cone9ag0499 Cone-Chr9:2387964 Cone14ag0778 Cone-Chr14:4523716 9.33E-91 dispersed
Cone9ag0499 Cone-Chr9:2387964 Cone9ag0505 Cone-Chr9:2417772 1.09E-74 proximal
Cone12ag0577 Cone-Chr12:4303219 Cone9ag0499 Cone-Chr9:2387964 2.84E-46 transposed
Cone13ag0873 Cone-Chr13:7771553 Cone9ag0499 Cone-Chr9:2387964 1.17E-207 wgd
Cone19ag0878 Cone-Chr19:6886699 Cone9ag0499 Cone-Chr9:2387964 1.09E-71 wgd
Cone6ag0487 Cone-Chr6:2421458 Cone9ag0499 Cone-Chr9:2387964 1.42E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83168 PF14368 LTP_2 6.40E-14 CL0482 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0499 - - - 0.0