Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0500 ATGCGCGCCACAGATCCACCGGTCACTCTATCGCCGATTGTCGCTCGTCTTTTCGAGCTGGACCTCGTCGAGATCGGTTTTCTTTACCGAAGCTCCGATCCCGATGCCTGTCTTGGTTCGGACCCTGAAGCCGGGACGGCGGGACCCAACGAGTACGGATCCAAGCTGCCGGTCAGCTTTGAGGAGTCGGAGGTCTCGACTGGTTCTGTGTCTTCTCCCTCGTCGTCTTCCGTGATCGATTTTCTCACATTGTGTCATCGTCTCAAGACCACAAAGAGGAAGGGTTGGATCAATCATGGGATAAGGGGTCCTGAGTCAATAGCTGACCACATGTACCGCATGGCTATTATGACTTTGATTGCAGATGACCTTCCGGGTGTGTCAAGATGGCTATTGTGCATGACATTGCATAAGGCTCACCTAAGTCTTAGCCCAATCCTAACTATTGTTGGAGATATAACCCCATCTGATGGAGTACCCAAAGCAGAAAAGAGCAGAAGAGAGTCGGCAGCCTTGAAGGAAATGTGCGGAGTTCTTGGTGGAGGGACTAGGGCTGATGAAATCAAGGAGCTTTGGACTGAGTATGAGAATAATTCTTCTTTAGAGGCTAATCTTGTGAAAGATTTTGATAAAATTGAAATGATTCTTCAAGCATTGGAATATGAGATGGAACATGGGAAAGTTCTAGATGAGTTCTCCCTTTCCTCCGCAGGAAAATTTCAGACTGATATCGGAAAGAGATGGGCAGCTGAGGTCGCTTCTAGAAGAAATTCAAGACTGGCAAACAGAAATAGTTAA 798 47.62 MRATDPPVTLSPIVARLFELDLVEIGFLYRSSDPDACLGSDPEAGTAGPNEYGSKLPVSFEESEVSTGSVSSPSSSSVIDFLTLCHRLKTTKRKGWINHGIRGPESIADHMYRMAIMTLIADDLPGVSRWLLCMTLHKAHLSLSPILTIVGDITPSDGVPKAEKSRRESAALKEMCGVLGGGTRADEIKELWTEYENNSSLEANLVKDFDKIEMILQALEYEMEHGKVLDEFSLSSAGKFQTDIGKRWAAEVASRRNSRLANRNS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2393560 2396977 - Conep09aG0051000.1 Cone9ag0500 444663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0500 265 Pfam HD domain 86 237 IPR006674 -
Cone9ag0500 265 Gene3D Hypothetical protein af1432 63 265 - -
Cone9ag0500 265 PANTHER UNCHARACTERIZED 61 264 IPR039356 GO:0002953(PANTHER)|GO:0002953(InterPro)|GO:0005737(PANTHER)
Cone9ag0500 265 SUPERFAMILY HD-domain/PDEase-like 76 244 - -
Cone9ag0500 265 FunFam HD domain-containing protein 2 66 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0500 K07023 - - csv:101206032 285.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0595 Cone-Chr2:3559256 Cone9ag0500 Cone-Chr9:2393560 3.96E-75 wgd
Cone6ag0488 Cone-Chr6:2426534 Cone9ag0500 Cone-Chr9:2393560 5.74E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0488 Cone9ag0500 . . . . . Blo11g00818 Bda07g01514 . Bpe11g01677 . . . . . . . . . . Cpe13g00023 . Bhi12g01430 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001138 3 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 1 2 3 6 4 79