Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0505 ATGCCGTATTATTTCCCCGTCAATACTTCTCAAAGCTCGTCACTTCCCGGAAAACCCAAAGGCAAGAAGATCGCCTTAGCCTTCAGCTCTAGCCTCGGCTGCATCTGTCTTATAACTCTCGGGTTCGGTTTTTTTCTTTGGTCGAGGCAAAGATACAACCAGCAAATATTCTTTGATGTTCATGAACAAAACCATGAAGTAGTATACCTCGGAAACCTAAAGAAGTTTCACTTCAGAGAACTTCAAATCGCCACAAACAACTTCAGCAGCAAGAACTTGGTTGGCAAGGGTGGTTTCGGAAATGTCTACAAAGGGGTTCTCCGAGACGGCACGGTTATAGCCGTTAAAAGACTAAAAGATGGAAATGCCATTGGAGGCGAGATTCAATTCCAAACTGAAGTTGAGATGATCAGCCTAGCTGTTCATCGTAATCTCCTCCGCCTCTATGGATTCTGCATGTCTTCCTCTGAACGGCTCCTAGTCTACCCCTACATGTCAAATGGAAGCGTTGCTTCTCGCCTCAAAGTAAAACCGGTTCTAGATTGGATTACAAGGAAAAGAGTTGCCTTGGGGGCGGCAAGGGGACTACTATATTTACACGAGCAATGTGATCCAAAGATCATTCACAGAGATGTAAAGGCTGCAAATATATTGCTCGATGACTGCTGTGAGGCAGTGGTTGGAGATTTCGGGTTGGCAAAGCTGTTAGATCACACAGAATCACATGTCACAACTGCTGTTAGAGGAACAGTTGGACATATCGCCCCGGAATATCTCTCCACCGGCCAGTCCTCAGAAAAGACCGACGCATTCGGTTTTGGGATTCTCCTTCTTGAATTGATTTCCGGTTTAAGAGCACTTGAATTCGGAAAAGCATCAAACCAGAAGGGTGGGGCAATGCTCGATTGGGTAAAGAAAATACACCAAGAAAAAAAGCTTGAGTTGCTGGTTGATAAGGACATGAAGGGTAACTACGATAGGATCGAGCTGGAGGAAATGGTTCAAGTTGCTCTTTTATGTACACAGAACCTTCCGAGCCATAGGCCGAAGATGTCAGAAGTGGTTCGGATGCTTGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCTCAGAAAGCAGATGGAAACAGGTCAAGAGCCAATGACTTTTCTTCTTCGGAACGTTACTCCGATCTCACTGATGACTCTTCATTGCTTGCTCAAGCAATGGAGCTTTCAGGACCGAGATGA 1230 45.45 MPYYFPVNTSQSSSLPGKPKGKKIALAFSSSLGCICLITLGFGFFLWSRQRYNQQIFFDVHEQNHEVVYLGNLKKFHFRELQIATNNFSSKNLVGKGGFGNVYKGVLRDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMSSSERLLVYPYMSNGSVASRLKVKPVLDWITRKRVALGAARGLLYLHEQCDPKIIHRDVKAANILLDDCCEAVVGDFGLAKLLDHTESHVTTAVRGTVGHIAPEYLSTGQSSEKTDAFGFGILLLELISGLRALEFGKASNQKGGAMLDWVKKIHQEKKLELLVDKDMKGNYDRIELEEMVQVALLCTQNLPSHRPKMSEVVRMLEGDGLAEKWEASQKADGNRSRANDFSSSERYSDLTDDSSLLAQAMELSGPR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2417772 2419732 + Conep09aG0051500.1 Cone9ag0505 444668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0505 409 Gene3D Phosphorylase Kinase; domain 1 57 164 - -
Cone9ag0505 409 Gene3D Transferase(Phosphotransferase) domain 1 165 378 - -
Cone9ag0505 409 MobiDBLite consensus disorder prediction 376 400 - -
Cone9ag0505 409 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0505 409 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 409 - -
Cone9ag0505 409 Pfam Protein tyrosine and serine/threonine kinase 91 358 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0505 409 SUPERFAMILY Protein kinase-like (PK-like) 64 359 IPR011009 -
Cone9ag0505 409 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524(InterPro)
Cone9ag0505 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0505 409 SMART serkin_6 88 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0505 409 MobiDBLite consensus disorder prediction 368 409 - -
Cone9ag0505 409 FunFam Somatic embryogenesis receptor-like kinase 1 165 378 - -
Cone9ag0505 409 FunFam Somatic embryogenesis receptor kinase 1 57 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0880 Cone-Chr13:7810409 Cone9ag0505 Cone-Chr9:2417772 8.38E-233 dispersed
Cone19ag0878 Cone-Chr19:6886699 Cone9ag0505 Cone-Chr9:2417772 1.25E-228 dispersed
Cone6ag0493 Cone-Chr6:2454752 Cone9ag0505 Cone-Chr9:2417772 4.69E-284 dispersed
Cone8ag0675 Cone-Chr8:6742879 Cone9ag0505 Cone-Chr9:2417772 5.62E-190 dispersed
Cone8ag0793 Cone-Chr8:7971620 Cone9ag0505 Cone-Chr9:2417772 1.15E-152 dispersed
Cone9ag0505 Cone-Chr9:2417772 Cone6ag1615 Cone-Chr6:12479507 1.20E-84 dispersed
Cone9ag0499 Cone-Chr9:2387964 Cone9ag0505 Cone-Chr9:2417772 1.09E-74 proximal
Cone2ag0590 Cone-Chr2:3452759 Cone9ag0505 Cone-Chr9:2417772 2.52E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83169 PF03999 MAP65_ASE1 4.00E-81 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0505 - - - 0.0